View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_high_10 (Length: 398)
Name: NF9001_high_10
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 47580369 - 47579993
Alignment:
| Q |
9 |
cagaacctgtgcaaataaccatgcacttgcaatggaaaacagaactgcaaatcggtcaaatgtaggcttcttggtgcttatataacaatgaagatactgc |
108 |
Q |
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| T |
47580369 |
cagaagctgtgcaaataaccatgcacttgcaatggtaaacagaactgcaaatcggtcaaatgtaggcttcttggtgcttatataacgatgaagatactgc |
47580270 |
T |
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| Q |
109 |
agcatcatataaaacaataaacacattcagtaccagaatttaagaaaaagaatggattttaaatcactaattaacttgcctgagagatgaaaaccatagc |
208 |
Q |
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| T |
47580269 |
agcatcatataaaacaataaacacattcagtaccagaatttaagaaatagaatggattttaaatcactaattaacttgcctgagagatgaaaaccataac |
47580170 |
T |
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| Q |
209 |
aataagtgccggaagcccaacttcaatacaagttgccagctgcaacagtgattggaaaaattaaaggggaagaatcatacaatataatcctatatatcct |
308 |
Q |
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| T |
47580169 |
aataagtgccggaagcccaacttcaatacaagttgccagctgcaacagtgattggaaaaattaaaggggaagaatcatacaatataatcctatatatcct |
47580070 |
T |
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| Q |
309 |
caagtcctaaacttatagaagctgaattgcatgaaaaatttaacatggatacaagagtttaagccctttgaatgaaa |
385 |
Q |
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| T |
47580069 |
caagtcctaaacttatagaagctgaattgcatgaaaaatttaacatggatacaagagtgcaagccctttgaatgaaa |
47579993 |
T |
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