View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_high_11 (Length: 385)
Name: NF9001_high_11
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 54201859 - 54202236
Alignment:
| Q |
1 |
aggtagaatatttcctcaaattaaccataccattgaattaaatttattcaactggaaatttaggcctaaaatgtatatatgttaattaaaatatgcagat |
100 |
Q |
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| T |
54201859 |
aggtagaatatttcctcaaattaaccataccattgaattaaatttattcaattggaaatttaggcctaaa-tgtatacatgttaattaaaatttgcagat |
54201957 |
T |
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| Q |
101 |
gggatctcacatgaagagaggaatatttgaggagcaaacaacaaaagcacttaaaaaatggcaaaaggcagcaagagataagaggaagttaaggaatgca |
200 |
Q |
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| T |
54201958 |
gggatctcacatgaagagaggaatatttgaggagcaaacaacaaaagcacttaaaaaatggcaaaaggcagcaagagataagaggaagttaaggaatgca |
54202057 |
T |
|
| Q |
201 |
ggatcaatagagattccttcagtgagtggagacacaacaccaagccaaggaacatcacctttgcacttgcttcacaagttcaaacctagtaaccaaacag |
300 |
Q |
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| T |
54202058 |
ggatcaatagagattccttcagtgagtggagacacaacaccaagccaaggaacatcacctttgcacttgcttcacaagttcaaacctagtaaccaaacag |
54202157 |
T |
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| Q |
301 |
acacagatagtgttctatattctccaagatcataccaatctgaaactgatttttcagacacagaataatctacccacca |
379 |
Q |
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| T |
54202158 |
acacagatagtgttctatattctccaagatcataccaatctgaaactgatttttcagacacagaaggatctacacacca |
54202236 |
T |
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