View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9001_high_15 (Length: 373)

Name: NF9001_high_15
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9001_high_15
NF9001_high_15
[»] chr3 (4 HSPs)
chr3 (132-358)||(23540556-23540782)
chr3 (1-132)||(23543714-23543845)
chr3 (138-310)||(46239219-46239391)
chr3 (187-241)||(30039198-30039252)
[»] chr7 (1 HSPs)
chr7 (138-285)||(3438076-3438223)
[»] chr8 (1 HSPs)
chr8 (187-241)||(3922263-3922317)
[»] chr1 (1 HSPs)
chr1 (186-241)||(36914356-36914411)
[»] scaffold0049 (1 HSPs)
scaffold0049 (187-241)||(2991-3045)
[»] chr5 (2 HSPs)
chr5 (187-241)||(29877291-29877345)
chr5 (199-313)||(32955434-32955548)
[»] chr4 (1 HSPs)
chr4 (187-241)||(6868085-6868139)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 132 - 358
Target Start/End: Complemental strand, 23540782 - 23540556
Alignment:
Q  132 ttcataggtgatttagatgcacacatctttatcctcaaagacttaccaccaatattgactctattgctaccattagctggtgcttcaacttcaacagctt 231  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23540782 ttcataggtgatttagatgcacacttctttatcctcaaagacttaccaccaacattgactctattgctaccattagctggtgcttcaacttcaacagctt 23540683  T
Q  232 caaacccatcattaactggagcacccctctcatcctcactgtcatcaaacttcacatctctagcaccaccatcatcactactgtaaacatacaggttgtc 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23540682 caaacccatcattaactggagcacccctctcatcctcactgtcatcaaacttcacatctctagcaccaccatcatcactactataaacatacaggttgtc 23540583  T
Q  332 ttcatcttcagcactagacccattgat 358  Q
    |||||||||| ||||||||||||||||    
T  23540582 ttcatcttcatcactagacccattgat 23540556  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23543845 - 23543714
Alignment:
Q  1 tagcacctggatcctgtatgttcttgcacttcactttccttaacctggaactgcatctcttagtaatctttgggacattcagcattcttggtctattcat 100  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23543845 tagcacctggaccctgtatgttcttgcacttcagtttccttaacctggaactgcatctcttagtaatctttgggacattcagcattcttggtctattcat 23543746  T
Q  101 tggccttgggacattcaacattcttggtccat 132  Q
    |||||| |||||||||| ||||||||||||||    
T  23543745 tggcctagggacattcagcattcttggtccat 23543714  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 46239391 - 46239219
Alignment:
Q  138 ggtgatttagatgcacacatctttatcctcaaagacttaccaccaatattgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacc 237  Q
    |||||||| || |||||  |||| |||||||||||||| ||||||| ||  ||||||||  | ||| |  | ||||| || |||||||||    ||||||    
T  46239391 ggtgattttgaagcacaagtcttaatcctcaaagacttcccaccaacatctactctattagttccactcacaggtgcatccacttcaacataggcaaacc 46239292  T
Q  238 catcattaactggagcacccctctcatcctcactgtcatcaaacttcacatctctagcaccaccatcatcact 310  Q
    ||||||||| || || | |||||||||||||||||||||||||||||| | || | |||||||||||||||||    
T  46239291 catcattaagtgcagtagccctctcatcctcactgtcatcaaacttcaaacctttggcaccaccatcatcact 46239219  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 30039198 - 30039252
Alignment:
Q  187 tgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    ||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||    
T  30039198 tgactctgttgttaccattagcaggtgcttcaacttcaacatcttcaaacccatc 30039252  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 3438076 - 3438223
Alignment:
Q  138 ggtgatttagatgcacacatctttatcctcaaagacttaccaccaatattgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacc 237  Q
    |||||||| || |||||  |||| |||||||||||||| ||||||| ||  |||||||| || ||| |  | ||||| || |||||||||    ||||||    
T  3438076 ggtgattttgaagcacaagtcttaatcctcaaagacttcccaccaacatctactctattacttccactcacaggtgcatccacttcaacataggcaaacc 3438175  T
Q  238 catcattaactggagcacccctctcatcctcactgtcatcaaacttca 285  Q
    ||||||||| || || | ||||||||||||||||||||||||||||||    
T  3438176 catcattaagtgcagtagccctctcatcctcactgtcatcaaacttca 3438223  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 3922263 - 3922317
Alignment:
Q  187 tgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    ||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||    
T  3922263 tgactctgttggtaccattagcaggtgcttcaacttcaacatcttcaaacccatc 3922317  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 36914411 - 36914356
Alignment:
Q  186 ttgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    |||||||| ||| |||||||||| |||||||||||||||||  |||||||||||||    
T  36914411 ttgactctgttggtaccattagcaggtgcttcaacttcaacttcttcaaacccatc 36914356  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 2991 - 3045
Alignment:
Q  187 tgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    ||||||| ||| |||||||||  |||||||||||||||||| |||||||||||||    
T  2991 tgactctgttggtaccattagtaggtgcttcaacttcaacatcttcaaacccatc 3045  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 29877345 - 29877291
Alignment:
Q  187 tgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    ||||||| ||| |||||||||  |||||||||||||||||| |||||||||||||    
T  29877345 tgactctgttggtaccattagtaggtgcttcaacttcaacatcttcaaacccatc 29877291  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 32955434 - 32955548
Alignment:
Q  199 taccattagctggtgcttcaacttcaacagcttcaaacccatcattaactggagcacccctctcatcctcactgtcatcaaacttcacatctctagcacc 298  Q
    |||||||||| ||||||||||||||||||  |||||||||||| | || || ||     || |||||||||||||||| ||||   ||| || |||||||    
T  32955434 taccattagcaggtgcttcaacttcaacattttcaaacccatcttcaagtgcagtggttctttcatcctcactgtcattaaacccaacaactttagcacc 32955533  T
Q  299 accatcatcactact 313  Q
    | |||||||||||||    
T  32955534 atcatcatcactact 32955548  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 6868139 - 6868085
Alignment:
Q  187 tgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacccatc 241  Q
    ||||||| ||| |||||||| | |||||||||||||||||  |||||||||||||    
T  6868139 tgactctgttggtaccattaacaggtgcttcaacttcaacttcttcaaacccatc 6868085  T

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