View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_high_2 (Length: 512)
Name: NF9001_high_2
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 54478708 - 54478530
Alignment:
| Q |
10 |
ttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaatttgctcattggacgactaaaaggtttgtcaaaactagatacacgta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54478708 |
ttctttaatattgatgtagtatcgtacattatagaaaataaaataatgactaatttgctcattggacgactaaaaggtttgtcaaaactagatac----a |
54478613 |
T |
|
| Q |
110 |
cttatgcagaacttgtggacctgcaatagattgtagttaattggaaacaaattccaaatattatgatgaagctttatattgaa |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54478612 |
cttatgcaaaacttgtggacctgcaatagattgtagttaattggaaacaaattccaaatattatgatgaagctttatattgaa |
54478530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 183 - 331
Target Start/End: Complemental strand, 54478509 - 54478361
Alignment:
| Q |
183 |
ttatattgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagattttagacaaaaagccaagttaaagaacttttaaattctaatt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54478509 |
ttatattgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagatgttagacaaaaagccaagttaaagaacttttaaattctaatt |
54478410 |
T |
|
| Q |
283 |
aacagtcttcataactgcaactgctaattatttctactgatcaatcatt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54478409 |
aacagtcttcataactgcaactgctaattatttctactgatcaatcatt |
54478361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 414 - 503
Target Start/End: Complemental strand, 54478286 - 54478197
Alignment:
| Q |
414 |
gacaaagcaagattccttctaattttggtacatgattttgaggatttgattatctcnnnnnnnctttgctcgcaacattattttgatgtc |
503 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54478286 |
gacaaagcaagattccttctaactttggtacatgattttgaggatttgattatctctttttttctttgctcgcaacattattttgatgtc |
54478197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 44590293 - 44590237
Alignment:
| Q |
187 |
attgaagacaagcagatagcacttgtttggttctacgaggatgcagatcaagatttt |
243 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44590293 |
attgaagataaggagacagcacttgtttggtgctacgaggatgcagatccagatttt |
44590237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University