View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9001_high_37 (Length: 213)

Name: NF9001_high_37
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9001_high_37
NF9001_high_37
[»] chr6 (11 HSPs)
chr6 (1-197)||(21967012-21967208)
chr6 (19-197)||(22001300-22001478)
chr6 (19-197)||(22085350-22085537)
chr6 (112-197)||(21967569-21967654)
chr6 (110-191)||(18994974-18995055)
chr6 (110-190)||(22209771-22209851)
chr6 (110-191)||(20083328-20083409)
chr6 (112-191)||(18990386-18990465)
chr6 (125-191)||(18979048-18979114)
chr6 (111-197)||(20235300-20235386)
chr6 (111-197)||(22129284-22129370)
[»] scaffold0264 (1 HSPs)
scaffold0264 (110-191)||(14809-14890)
[»] scaffold0074 (1 HSPs)
scaffold0074 (110-191)||(50404-50485)
[»] scaffold0007 (1 HSPs)
scaffold0007 (110-191)||(7938-8019)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 21967012 - 21967208
Alignment:
Q  1 attgttcacaacaatcatacaattaaaagaaaacctaacaatctaccgaggaaaaaatgtacttgaaggcattccattgctagagaatagggcagaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21967012 attgttcacaacaatcatacaattaaaagaaaacctaacaatctaccgaggaaaaaatgtacttgaaggcattccattgctagagaatagggcagaacta 21967111  T
Q  101 tcattataggttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21967112 tcattgtaggttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 21967208  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 22001300 - 22001478
Alignment:
Q  19 acaattaaaagaaaacctaacaatctaccgaggaaaaaatgtacttgaaggcattccattgctagagaatagggcagaactatcattataggttctacct 118  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  22001300 acaattaaaagaaaacctgacaatctaccgaggaaaaaaagtacttgaaggcattccattgctagagaatagggcagaactatcattgtaggatctacct 22001399  T
Q  119 tgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22001400 tgcaggaaaaatgcaggttgttgtggagttcgtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 22001478  T

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Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 22085350 - 22085537
Alignment:
Q  19 acaattaaaagaaaacctaacaatctaccgaggaaaaaatgtacttgaaggcattccattgctagagaatagggcagaactat---------cattatag 109  Q
    |||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||         |||||||     
T  22085350 acaattaaaagaaaacctgacaatctatcgaggaaaaaaagtagttgaaggcattccattgctagagaatagggcagaactattggcatattcattataa 22085449  T
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22085450 tttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 22085537  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 21967569 - 21967654
Alignment:
Q  112 tctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21967569 tctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 21967654  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 18994974 - 18995055
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||||| |||| |||||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  18994974 gttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtca 18995055  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 22209851 - 22209771
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtc 190  Q
    |||||||| |||| |||||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| ||||    
T  22209851 gttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtc 22209771  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 20083328 - 20083409
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||||| |||| |||||| ||||||| | ||||||||||||| |||| || || |||||||||||||||||||| |||||    
T  20083328 gttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtca 20083409  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 18990386 - 18990465
Alignment:
Q  112 tctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||| |||| |||||| ||||||| | ||||||||||||| |||| || || | |||||||||||||||||| |||||    
T  18990386 tctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtca 18990465  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 18979048 - 18979114
Alignment:
Q  125 aaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    ||||| ||||||| ||| ||||||||||| |||| || || ||||||||||||||||| || |||||    
T  18979048 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtca 18979114  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 20235300 - 20235386
Alignment:
Q  111 ttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
    ||||||| |||| |||||| ||||||| ||  ||||||||||| |||| || || ||||||||| ||||||| || |||| ||||||    
T  20235300 ttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgagattg 20235386  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 22129284 - 22129370
Alignment:
Q  111 ttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattg 197  Q
    ||||||| |||| |||||| ||||||| ||  ||||||||||| |||| || || ||||||||| ||||||| || |||| ||||||    
T  22129284 ttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgagattg 22129370  T

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Target: scaffold0264 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 14809 - 14890
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||||| |||| |||||| ||||||| ||||||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  14809 gttctaccatgcaagaaaaacgcaggttcttgtggagttggtaaatcaattgcataactgctaagataagaagcaactgtca 14890  T

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Target: scaffold0074 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 50485 - 50404
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||||| |||| |||||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  50485 gttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtca 50404  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 8019 - 7938
Alignment:
Q  110 gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtca 191  Q
    |||||||| |||| || ||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  8019 gttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtca 7938  T

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