View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_high_9 (Length: 435)
Name: NF9001_high_9
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 48753206 - 48752973
Alignment:
| Q |
1 |
tcaaataatagaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgttaaa--gaaggaaagaaggaga |
98 |
Q |
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| T |
48753206 |
tcaaataatagaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgttaaaaagaaggaaag---gaga |
48753110 |
T |
|
| Q |
99 |
gcttagaattctaactcattatatacgtatgattttataacaaaattgtgattttatctgacatgtagcatattactactcttacttcggaactcaaact |
198 |
Q |
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| T |
48753109 |
gcttagaattctaactcat-----------gattttataccaaaattgtgattttatctgacatgtagcatattactactcttacttcggaactcaaact |
48753021 |
T |
|
| Q |
199 |
taaagccaccatcattataagaaattaattaggaaagcaaactaagat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753020 |
taaagccaccatcattataagaaattaattaggaaagcaaactaagat |
48752973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 282 - 417
Target Start/End: Complemental strand, 48752937 - 48752811
Alignment:
| Q |
282 |
atccttcagtcttatgtaagttcgtatgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccatgtattccatatctccgaaggc |
381 |
Q |
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| T |
48752937 |
atccttcagtcttatgtaagttcgtatgtgcacctcgatctttccaacaaaaactcatacatcactttactgtct---------ccatatctccgaaggc |
48752847 |
T |
|
| Q |
382 |
aatctatgatatctttgcgatgcacgggaggggcag |
417 |
Q |
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| T |
48752846 |
aatctatgatatctttgcgatgcacgggaggggcag |
48752811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 52092564 - 52092758
Alignment:
| Q |
46 |
tggcaactgacaatgacacacaacactgaatgttaaagaaggaaagaaggagagcttagaattct--aactcattatatacgtatgattttataacaaaa |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||| |||| ||||| |
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| T |
52092564 |
tggcaactgacaatgacacacaacactgaatgttaaagaagga--------gagcttagaattctctaactcatgatttacgtatgattctataccaaaa |
52092655 |
T |
|
| Q |
144 |
ttgtgattttatctgacatgtagcatattactactcttacttcggaactcaaacttaaagccaccatcattataagaaattaattaggaaagcaaactaa |
243 |
Q |
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| T |
52092656 |
ttgtgattttatctcacatgtagcatattaccactcttactacggaactcaaacttaaagccaccaccattataagaaattaattaggaaagcaaactaa |
52092755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 52083482 - 52083591
Alignment:
| Q |
308 |
tgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccatgtattccatatctccgaaggcaatctatgatatctttgcgatgcacg |
407 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
52083482 |
tgtgcacctcgatctttccaacaaaaactcatacttcactttactgtctccatgtattccatatctccgaatgcaatctatgatatctttgagatgaacg |
52083581 |
T |
|
| Q |
408 |
ggaggggcag |
417 |
Q |
| |
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|||||||||| |
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|
| T |
52083582 |
ggaggggcag |
52083591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 52092845 - 52092954
Alignment:
| Q |
308 |
tgtgcacctcgatctttccaacaaaaactcatacatcactttactgtctccatgtattccatatctccgaaggcaatctatgatatctttgcgatgcacg |
407 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
52092845 |
tgtgcacctcgatctttccaacaaaaactcatacttcactttactgtctccatgtattccatatctccgaatgcaatctatgatatctttgagatgaacg |
52092944 |
T |
|
| Q |
408 |
ggaggggcag |
417 |
Q |
| |
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|||||||||| |
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|
| T |
52092945 |
ggaggggcag |
52092954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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