View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_10 (Length: 504)
Name: NF9001_low_10
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 104 - 499
Target Start/End: Complemental strand, 6603263 - 6602867
Alignment:
| Q |
104 |
aaaatctcaatgttatttttgttgaaaagtcaacttatatggtcttccggtttttnnnnnnnnnnnnnn-cgttttccgtaatttagagtttggtcaaaa |
202 |
Q |
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| T |
6603263 |
aaaatctcaatgttatttttgttgaaaagtcaacttatttggtcttccggtttttaaaaagaaaaaaaaacattttccgtaatttaaagttcgatcaaaa |
6603164 |
T |
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| Q |
203 |
agtaaggagctatggattgtggaagatcaaattttggtacttccctgattgaatcgacctagatcaaaggttcaatatttatcaattacttgaactcgac |
302 |
Q |
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| T |
6603163 |
agtaagtagctatggattgtggaagatcaaatttcgatacttccctaattgaatcgacctagatcaaaggttcaatacttatcaattacttgaactcgac |
6603064 |
T |
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| Q |
303 |
cacaaattaaaatcaatgtatttcaattaatttgttgtccacaagtttatagatggcagaaagttgatcatgtaggttaataaattattattatctattc |
402 |
Q |
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| T |
6603063 |
cacaaattaaaatcaatgtatttcaattaatttgttgtccacaagtttatagatggcagaaagttgatcatgtaggttaataaattattattatctattc |
6602964 |
T |
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| Q |
403 |
tccctggttttgttttggtaacttttatatcatgactgtacactcatgttccaccacataacatattcactgaatataacacagtcaaacatgaaac |
499 |
Q |
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| T |
6602963 |
tccctggttttgttttggtaacttttatatcatgactgtacactcatgttccaccacataacatattcactgaatataacacagtcaaacatgaaac |
6602867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 6604172 - 6604082
Alignment:
| Q |
18 |
caatcgttaatgtctaatataagaccttagtgccattcaaaaaa---taataataatataagaccttaagcattagtattagttgatataaa |
106 |
Q |
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| T |
6604172 |
caatcgttaatgtctaatataagaccttagtgccattcaaaaaaaataaaaaataatataagacctt-agcattagtattagttcatataaa |
6604082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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