View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_109 (Length: 206)
Name: NF9001_low_109
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_109 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 13094134 - 13094306
Alignment:
| Q |
14 |
agacacacagagaaacaattataaataggttatagcagacaacataaatcgtggttcattcggagagacttcagtcaaatgtttcttttagagacttcaa |
113 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13094134 |
agacacaaagagatacaattataaataggttatagcagacaacataaatcgtggttcattcggagagacttcagtcaaatgcttcttttagagacttcaa |
13094233 |
T |
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| Q |
114 |
ccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
186 |
Q |
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| T |
13094234 |
ccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
13094306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 13161256 - 13161428
Alignment:
| Q |
14 |
agacacacagagaaacaattataaataggttatagcagacaacataaatcgtggttcattcggagagacttcagtcaaatgtttcttttagagacttcaa |
113 |
Q |
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||||||||||| |||||| | ||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13161256 |
agacacacagaacaacaatgacaaataggttataggacacaacataaatcttggatcattcggagagacttcagtcaaatgcttcttttagagacttcaa |
13161355 |
T |
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| Q |
114 |
ccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
186 |
Q |
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| T |
13161356 |
ccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtat |
13161428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 13129585 - 13129735
Alignment:
| Q |
36 |
aaataggttatagcagacaacataaatcgtggttcattcggagagacttcagtcaaatgtttcttttagagacttcaaccttcatgccatgtttcatgct |
135 |
Q |
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| T |
13129585 |
aaataggttataggagacaacataaatcgtggatcattcggagaagtctcagtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcg |
13129684 |
T |
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| Q |
136 |
aagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
186 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13129685 |
aagaagcacagaaagccttggggttacagggtgaccttccaccacctgtat |
13129735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 13178535 - 13178700
Alignment:
| Q |
14 |
agacacacagagaaacaattataaataggttatagcagacaacataaatcgtggttcattcggagagacttcagtcaaatgtttcttttagagacttcaa |
113 |
Q |
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|||||||||||| |||||| | ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
13178535 |
agacacacagagcaacaatgacaaataggttataggagacgacataaatcgtggatcattcggagaagtctcagtcaaatgcttcttttagagacttcaa |
13178634 |
T |
|
| Q |
114 |
ccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttccacca |
179 |
Q |
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| T |
13178635 |
ccttcaagccatgtttcatgcgaagaagcacagaaagcctcgaggttacagggtgtccttccacca |
13178700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 13070574 - 13070461
Alignment:
| Q |
73 |
tcggagagacttcagtcaaatgtttcttttagagacttcaaccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgacct |
172 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |||||| | ||||||||||||| ||||| | |||||| |||||||||||||||||||| |
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| T |
13070574 |
tcggagagacttcagtcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgacct |
13070475 |
T |
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| Q |
173 |
tccaccacctgtat |
186 |
Q |
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|||||||||||||| |
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| T |
13070474 |
tccaccacctgtat |
13070461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 13006998 - 13007103
Alignment:
| Q |
77 |
agagacttcagtcaaatgtttcttttagagacttcaaccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttcca |
176 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||| ||||| | ||||||| | ||||||| |||||||||| ||| |
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| T |
13006998 |
agagacttcagtcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgcca |
13007097 |
T |
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| Q |
177 |
ccacct |
182 |
Q |
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|||||| |
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| T |
13007098 |
ccacct |
13007103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 13100798 - 13100908
Alignment:
| Q |
76 |
gagagacttcagtcaaatgtttcttttagagacttcaaccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttcc |
175 |
Q |
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|||||||||| || ||||| |||||||| ||||| ||||||| ||||||||||||| ||||| | ||||||| | ||||||| ||||||||||||| |
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| T |
13100798 |
gagagacttccgttaaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttcc |
13100897 |
T |
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| Q |
176 |
accacctgtat |
186 |
Q |
| |
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||||||||||| |
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| T |
13100898 |
accacctgtat |
13100908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 13204257 - 13204357
Alignment:
| Q |
77 |
agagacttcagtcaaatgtttcttttagagacttcaaccttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttcca |
176 |
Q |
| |
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||||| |||| ||||||| |||||||| ||||| |||||| | |||| ||||||| ||||| | ||||| | |||||||||||||||||||||||| |
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| T |
13204257 |
agagagttcattcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttcca |
13204356 |
T |
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| Q |
177 |
c |
177 |
Q |
| |
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| |
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| T |
13204357 |
c |
13204357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 30368463 - 30368393
Alignment:
| Q |
116 |
ttcatgccatgtttcatgctaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
186 |
Q |
| |
|
|||| |||||||||||| | ||| | |||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
30368463 |
ttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
30368393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 13244834 - 13244806
Alignment:
| Q |
158 |
gttacagggtgaccttccaccacctgtat |
186 |
Q |
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| T |
13244834 |
gttacagggtgaccttccaccacctgtat |
13244806 |
T |
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