View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_11 (Length: 495)
Name: NF9001_low_11
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 53219935 - 53219453
Alignment:
| Q |
1 |
agtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagtta-tttatgaatt |
99 |
Q |
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| T |
53219935 |
agtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgatttgttgtcataatttgtcttgactgaacttaatttatgaatt |
53219836 |
T |
|
| Q |
100 |
ttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53219835 |
ttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaa |
53219736 |
T |
|
| Q |
200 |
attgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgaattctagattgagggaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53219735 |
attgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgtattctagattgagggaaca |
53219636 |
T |
|
| Q |
300 |
tgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcattt |
399 |
Q |
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| T |
53219635 |
tgtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcattt |
53219536 |
T |
|
| Q |
400 |
gcaactacagtcatgtaaaatgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgatgtc |
482 |
Q |
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| T |
53219535 |
gcaactacagtcatgtaaaatgttatcatatttgtgcagtagcttttcttttgttgttctgttattttgcactcattgatgtc |
53219453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 15412028 - 15411804
Alignment:
| Q |
1 |
agtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagttatttatgaattt |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
15412028 |
agtagggtttataatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttttcataacttgtcttgactaaa---atttatgaattt |
15411932 |
T |
|
| Q |
101 |
tattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaa |
200 |
Q |
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| T |
15411931 |
tattaaaagtataactactgtacaggattgttgcaaagcaccattttggagagtgtaggatgcatttggttcaatcgatcagaagcaaaggatcgagaaa |
15411832 |
T |
|
| Q |
201 |
ttgtggcaagaaagttagtataagtaaa |
228 |
Q |
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| T |
15411831 |
ttgtggcaagaaagttagtataagtaaa |
15411804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 221 - 479
Target Start/End: Complemental strand, 15411619 - 15411350
Alignment:
| Q |
221 |
taagtaaaaatattagaaaatatatatctgtttcaaattcctccttac----atgattatgcgaattctagattgagggaacatgtccagggagctgaca |
316 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15411619 |
taagtaaagttattagaaaatatat--ctgtttcaaattcctccttacttacatgattatgcatattctagattgagggaacatgtccagggagctgaca |
15411522 |
T |
|
| Q |
317 |
acaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgta |
416 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
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| T |
15411521 |
ataatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgta |
15411422 |
T |
|
| Q |
417 |
aa---------atgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgat |
479 |
Q |
| |
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|| ||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
15411421 |
aaatgcagtttatgttatcatattagtgcaatagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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