View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_14 (Length: 479)
Name: NF9001_low_14
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 4510499 - 4510036
Alignment:
| Q |
1 |
cttcctctttatacctcacccaagagaaatcgaacaattattttgcgatgaataatagacacagtatataaaaattcaatcataagtgcatatcaaaaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4510499 |
cttcctctttatacctcagccaagagaaatcgaacaattattttgcgatgaataatagacacggtatataaaaattcaatcataagtgcatatcaaaaat |
4510400 |
T |
|
| Q |
101 |
taaaagaggataaaggaacaattgaaatgaaacttacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4510399 |
taaaagaggataaaggaacaattgaaatgaaacttacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaa |
4510300 |
T |
|
| Q |
201 |
gcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcccttcgtttctctcctacaacgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
4510299 |
gcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcccttcatttctctcctacaacaata |
4510200 |
T |
|
| Q |
301 |
taacaaaatggaaaacattacattccaatctcaatgtttgcaaatcaattggggcgaatgttcattaatatccgacattatttaataactatcctataaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4510199 |
taacaaaatggaaaacattacattccaatctcaatgtttgcaaatcaattggggcgaacgttcattaatatccgacattatttaataactatcctataaa |
4510100 |
T |
|
| Q |
401 |
gctagggatttttcacaaggctacctgaagatccatcattgccatgtacttctgcaatggaact |
464 |
Q |
| |
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|
| T |
4510099 |
gctagggatttttcacaaggctacctgaagatccatcattgccatgtacttctgcaatggaact |
4510036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 43208553 - 43208691
Alignment:
| Q |
135 |
tacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaaccggga |
234 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||| || || | ||| ||||||||| |||||||| ||||||||| ||||||||| |||| |||| |
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|
| T |
43208553 |
tacttctctttcaaactaatatatagaccctgaggacgcttgtatatgctcccatatttttggcaagcctcaccaacaaccggagtatatacaattggga |
43208652 |
T |
|
| Q |
235 |
gtaactcctcaacatgatcaataagaagcttgtaaaaca |
273 |
Q |
| |
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| || ||||| || | ||||||||||| |||||||||| |
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| T |
43208653 |
gcaattcctcgacgttgtcaataagaagtttgtaaaaca |
43208691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 130 - 296
Target Start/End: Original strand, 43434190 - 43434356
Alignment:
| Q |
130 |
aaacttacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaac |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||| |||| || ||| ||| |||||||||||||| ||||||||||| |||||||| |||| |
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| T |
43434190 |
aaacttacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgtatttctggcaagcctcaccaacagttggagtatacacaat |
43434289 |
T |
|
| Q |
230 |
cgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcccttcgtttctctcctacaac |
296 |
Q |
| |
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|||||||| || ||||| |||||||| ||||| ||||||||||| | ||| ||||| |||| |||| |
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|
| T |
43434290 |
tgggagtaattcttcaacgtgatcaatgagaagtttgtaaaacagacgttcatttctttcctgcaac |
43434356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 51496676 - 51496570
Alignment:
| Q |
186 |
ccatatttctggcaagcttcaccaacagtcggagtataaacaaccgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcccttcgtttc |
285 |
Q |
| |
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|||||||||||||| ||||| ||||| || ||||| |||||||| || || || || || |||| ||| || | ||||||||||||||||| ||| || | |
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| T |
51496676 |
ccatatttctggcaggcttctccaactgttggagtgtaaacaacaggtagcaattcttcgacattatcgatcataagcttgtaaaacagcctttcattcc |
51496577 |
T |
|
| Q |
286 |
tctccta |
292 |
Q |
| |
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||||||| |
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|
| T |
51496576 |
tctccta |
51496570 |
T |
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