View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_16 (Length: 465)
Name: NF9001_low_16
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 143 - 465
Target Start/End: Complemental strand, 55301036 - 55300714
Alignment:
| Q |
143 |
tcatcaccaattccatctcctcctccatacccaaatctgttttgtcagcattttcttgttgtgacattactgtctccaaatttgatgttactctctccct |
242 |
Q |
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| T |
55301036 |
tcatcaccaattccatctcctcctccatacccaaatctgttttgtcagcattttcttgttgtgacaatactgtctccgaatttgatgttactctctccct |
55300937 |
T |
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| Q |
243 |
caaatgctttctcttatgctcttcaaccaacaacacaacatcgtcacacaaaattgttttctctggaatagtttctgattcataattaaccctcaaaggc |
342 |
Q |
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| T |
55300936 |
caaaggctttctcttatgctcttcaaccaacaacacaacatcgtcacacaaaattgttttctctggaatagtttctgattcataattaaccctcaaaggc |
55300837 |
T |
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| Q |
343 |
ttcccgccttcaacatcgtcactaccgtcgtccatcttctccaaagttgcttgtgatgatgacggattgttaaccctcaaaggcttcccttggatatcgg |
442 |
Q |
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| T |
55300836 |
ttcccgccttcaacatcgtcactaccgtcgtccatcttctccaaagttgcttgtgatgatgacggattgttaaccctcaaaggcttcccttggatatcgg |
55300737 |
T |
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| Q |
443 |
gatggatcaacaccatcgcctcc |
465 |
Q |
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| T |
55300736 |
gatggatcaacaccatcgcctcc |
55300714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 55301344 - 55301200
Alignment:
| Q |
1 |
tcatattcttcttaccaatgctttgagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgcccacagatac |
100 |
Q |
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| T |
55301344 |
tcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgcccacagatac |
55301245 |
T |
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| Q |
101 |
tcatacatatttccttcctcagccgtgatcatcgacttatgctca |
145 |
Q |
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| T |
55301244 |
tcatacatatttccttccacagccgtgttcatcgacttatgctca |
55301200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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