View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_18 (Length: 459)
Name: NF9001_low_18
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 444
Target Start/End: Original strand, 5279592 - 5280023
Alignment:
| Q |
10 |
tttggtgtttatccattttatctaggtttgatcttcggctggtgcctatggcaaattatatgttaaaagaagtcaatctcctaaatgcatttaagttatt |
109 |
Q |
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| T |
5279592 |
tttggtgtttatccattttgtctaggtttgatcttcggctggtttctatggcaaattatatgttaaaagaagccaatctcctaaatgcatttcagttatt |
5279691 |
T |
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| Q |
110 |
taagattatttatctctcctttgtgcttagtgatatatttctttgnnnnnnnnnnnnnnggaattcgaacttcaaaccttatatatattgtatattatcc |
209 |
Q |
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| T |
5279692 |
taagatgatttatctctcctttgtgcttagtgatatatttctgttttttttcttcca---gaattcgaactcaaaaccttatatatattatgtattattc |
5279788 |
T |
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| Q |
210 |
ttatgagttaagtttacgaagacatatattcatttgtttaaaaataaaaaggataaattttgactttttcttaatgctgaagacttaattataaatatta |
309 |
Q |
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| T |
5279789 |
ttatgagttaagtttacgaggacatatattcttttgtttaaaaataaaaaggataaattttgactttttctcaatgctagagacttaattataaatatta |
5279888 |
T |
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| Q |
310 |
gttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatattttcacacggcaaaattcaaagaccatttctgatttacctttt |
409 |
Q |
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| T |
5279889 |
gttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatattttcacacggcaaaattcaaagaccatttctgatttacctttt |
5279988 |
T |
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| Q |
410 |
caacaaataattaacttctgattttaattcaaatt |
444 |
Q |
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| T |
5279989 |
caacaaataattaacttctgattttaattcaaatt |
5280023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 5287824 - 5287928
Alignment:
| Q |
327 |
aatatttgagtaattggcacaatcgtac----cattactaa--tattttcacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataat |
420 |
Q |
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| T |
5287824 |
aatattggagtaattggcacaatcgtacgaaccattactaaaatatgtttacacggaaaaattgaatgaccaattctgatttaccctttcaacaaataat |
5287923 |
T |
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| Q |
421 |
taact |
425 |
Q |
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||||| |
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| T |
5287924 |
taact |
5287928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 5281374 - 5281283
Alignment:
| Q |
271 |
gactttttcttaatgctgaagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaa |
363 |
Q |
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| T |
5281374 |
gactttttcttagttcttgagacttaattataacaat-agttggtggaatatggaaaatattcgagtaattggcagagtcataccattactaa |
5281283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 5281187 - 5281142
Alignment:
| Q |
379 |
aaattcaaagaccatttctgatttaccttttcaacaaataattaac |
424 |
Q |
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| T |
5281187 |
aaattgaaacaccatctctgatttaccctttcaacaaataattaac |
5281142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 271 - 412
Target Start/End: Original strand, 6236697 - 6236840
Alignment:
| Q |
271 |
gactttttcttaatgctgaagacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattact--aatattt |
368 |
Q |
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| T |
6236697 |
gactttttcttatttcttgagacttaattataaacaatagttggtggaatatggaaaatattcgagtaattggcacagtcataccattactaaaatacgt |
6236796 |
T |
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| Q |
369 |
tcacacggcaaaattcaaagaccatttctgatttaccttttcaa |
412 |
Q |
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| T |
6236797 |
tcacacgacaaaattgaaagaccatttctgatttaccctttcaa |
6236840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 20352457 - 20352321
Alignment:
| Q |
290 |
agacttaattataaatattagttggtggactttggaaaatatttgagtaattggcacaatcgtaccattactaatatt--ttcacacgg-caaaattcaa |
386 |
Q |
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| T |
20352457 |
agacttaattataacaat-agttggtagaatatggaaaatattcgagtaattggcacagtcatagcattactaaaatacgttcacacggacaaaattgaa |
20352359 |
T |
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| Q |
387 |
agaccatttctgatttaccttttcaacaaataattaac |
424 |
Q |
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| T |
20352358 |
agaccatctctgatttaccctttcaacaaataattaac |
20352321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 20359211 - 20359315
Alignment:
| Q |
327 |
aatatttgagtaattggcacaatcgtac----cattactaa--tattttcacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataat |
420 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||| || ||||| |||||||||||| |||| ||||||||| |
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| T |
20359211 |
aatattggagtaattggcacaatcgtacgaaccattactaaaatatgttcacacggcaaaattgaatgaccaattctgatttaccctttccacaaataat |
20359310 |
T |
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| Q |
421 |
taact |
425 |
Q |
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||||| |
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| T |
20359311 |
taact |
20359315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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