View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_20 (Length: 449)
Name: NF9001_low_20
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 48356687 - 48356266
Alignment:
| Q |
15 |
tcaaacctgtctggcctaccagccaactttgatgattgccgtaacaatgtctccgggcctttcaaaaagatagaacaagagtaagttaagagaagcacat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48356687 |
tcaaacctgtctggcctaccagccaactttgatgattgccgtaacaatgtctccgggcctttcaaaaagatagaacaagagtaagttaagagaagcacat |
48356588 |
T |
|
| Q |
115 |
acaagagtaaaaaattaatgcagcaaccccagaatatagcacaatcagaaaagaaacttgtgattccgtccataaatataaataacacagaatcagaacc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48356587 |
acaagagtaaaaaattaatgcagcaaccccagaatatagcacaatcagaaaagaaacttgtgattccttccataaatataaataacacagaatcagaacc |
48356488 |
T |
|
| Q |
215 |
acacactttcacaaccacactacatgatttcagaaccacattggctaagatgtgcagcggaatatgttatccaatgtacaaattataaaaacatcatcag |
314 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
48356487 |
acacactttcacaaccacactacataatttcagaaccacattggctaagatgtgcagcggaatatgttatccaatgtacaaattataaaaacaac-tcag |
48356389 |
T |
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| Q |
315 |
catgctaatgcaacaaaagcagtccatgatgaatatcattgatcaaaccatatttttaccttggccaatttttattagcttccttagtccatgggcatac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48356388 |
catgctaatgcaacaaaagcagtccatgatgaatatcattgatcaaaccatatttttaccttggccaatttttattagcttccttagtccatgggcatac |
48356289 |
T |
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| Q |
415 |
cgcctcactctaggctgatgtcc |
437 |
Q |
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||||||||||||||| ||||||| |
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| T |
48356288 |
cgcctcactctaggccgatgtcc |
48356266 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 21928227 - 21928159
Alignment:
| Q |
369 |
tttaccttggccaatttttattagcttccttagtccatgggcataccgcctcactctaggctgatgtcc |
437 |
Q |
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|||||||||||||||| || | |||||||| || ||| ||||||||||||||||||||| ||||||| |
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| T |
21928227 |
tttaccttggccaattcttttaagcttcctcagcccagaggcataccgcctcactctaggtcgatgtcc |
21928159 |
T |
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