View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_21 (Length: 444)
Name: NF9001_low_21
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 102 - 432
Target Start/End: Complemental strand, 54682358 - 54682030
Alignment:
| Q |
102 |
agggggtgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaactcacttaaaaaactatagaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
54682358 |
agggggtgtttgtttctatagaaagattgtgatagggaaagaaagttaagagaaagatgcactttccttagtttggaactcacttaaaagactaaggaaa |
54682259 |
T |
|
| Q |
202 |
gaaagaattttgtgggatccatattaaaaacctttcacctcatgtatgcacggaaagattgtggaaaggttgggaaacaccctatgttgcatgaaaagtc |
301 |
Q |
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||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54682258 |
gaaagaattttgtgggacctatattaaaaacctttcccctcatgtatgcacggaaagattgtggaaaggttgggaaacaccctatgttgcatgaaaagtc |
54682159 |
T |
|
| Q |
302 |
caaaacatcccaaattcttgttacttttctttatttcactttttcttactaacttatttatttcaatattcatatgtaatctctctctttttattttctc |
401 |
Q |
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|||||||| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54682158 |
caaaacattcccaactcttgttacttttctttatttcactttt--ttactaacttatttatttcaatattcatttgtaatctctctctttttattttctc |
54682061 |
T |
|
| Q |
402 |
aatttattgcctaatattttttgtccgtctc |
432 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
54682060 |
aattcattgcctaatattttttgtccgtctc |
54682030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 48035881 - 48035767
Alignment:
| Q |
122 |
gaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaactcacttaaaaaactatagaaagaaagaattttgtgggatcc |
221 |
Q |
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| T |
48035881 |
gaaagattgtgagaaggagagaaagttgagggaaagaagcatttccccttgtttggaactcactaaaaaggcaaaggaaagaaagaattcagtgggaacc |
48035782 |
T |
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| Q |
222 |
atattaaaaaccttt |
236 |
Q |
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| | ||||||||||| |
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| T |
48035781 |
aaactaaaaaccttt |
48035767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 102 - 425
Target Start/End: Original strand, 10713075 - 10713401
Alignment:
| Q |
102 |
agggggtgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaactcacttaaaaaactatagaaa |
201 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
10713075 |
agggagtgtttgtttctatagaaagattgtaatagggaaagaaagttaagggaaagaagcactttccttagtttggaacttacttaaaagactaaggaaa |
10713174 |
T |
|
| Q |
202 |
gaaagaattttgtgggatccatattaaaaacctttcacctcatgtatgcacggaaagattgtggaaaggttgggaaacaccctatgttgcatgaaaagtc |
301 |
Q |
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| T |
10713175 |
gaaagaattttgtgggacccacattaaaaacctttcccctcatgtatgcacggaaagattgtggaaaggttgagaaacaccctatgttgcatgaaaagtc |
10713274 |
T |
|
| Q |
302 |
caaaacatcccaaattcttgttacttttctttatttcac---tttttcttactaacttatttatttcaatattcatatgtaatctctctctttttatttt |
398 |
Q |
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||||||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10713275 |
caaaacatccccaactcttgttacttttctttatttcactttttttttttactaacttatttatttcaatattcatttgtaatctctctctttttatttt |
10713374 |
T |
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| Q |
399 |
ctcaatttattgcctaatattttttgt |
425 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
10713375 |
ctcaattcattgcctaatattttttgt |
10713401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 34706911 - 34706830
Alignment:
| Q |
98 |
cttaagggggtgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaa |
179 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||| ||||| |||||| ||||||||||| || ||||| | |||||||| |
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| T |
34706911 |
cttaagggtgtgtttgtttctatggaaagatagtgagagggagagaaagacaagggaaagaaacattttccatggtttggaa |
34706830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 9020350 - 9020423
Alignment:
| Q |
107 |
gtgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaac |
180 |
Q |
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|||||||||||||| ||||||| |||| |||| |||||| ||||||||||| || ||||| | ||||||||| |
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| T |
9020350 |
gtgtttgtttctatggaaagatagtgagggggagagaaagacaagggaaagaaacattttccatggtttggaac |
9020423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 23185785 - 23185705
Alignment:
| Q |
108 |
tgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaactcacttaa |
188 |
Q |
| |
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||||||||||||| ||||| |||||| | ||| |||||||| || ||||||| ||||||| || ||||||||||||||||| |
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| T |
23185785 |
tgtttgtttctatggaaagtttgtgagaaggagagaaagttgagagaaagaaacactttctttcgtttggaactcacttaa |
23185705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 25749798 - 25749902
Alignment:
| Q |
141 |
agaaagttaagggaaagaagcactttccttagtttggaactcacttaaaaa-actatagaaagaaagaattttgtgggatccatattaaaaacctttcac |
239 |
Q |
| |
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|||||| | |||||| ||| ||||||| | |||||||||||||| ||||| | || ||||||||||||| |||||| ||||| |||||||||||| | |
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| T |
25749798 |
agaaaggtgagggaaggaaagactttccattgtttggaactcactcaaaaagattaaggaaagaaagaattcagtgggacccatactaaaaacctttccc |
25749897 |
T |
|
| Q |
240 |
ctcat |
244 |
Q |
| |
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||||| |
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| T |
25749898 |
ctcat |
25749902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 16440521 - 16440592
Alignment:
| Q |
120 |
tagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaactcacttaaaaa |
191 |
Q |
| |
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|||||||||||||| || || ||||||| ||||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
16440521 |
tagaaagattgtgagagtgagagaaagtcgagggaaagaagtactttccttagtttgtaactcactgaaaaa |
16440592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 925350 - 925423
Alignment:
| Q |
107 |
gtgtttgtttctatagaaagattgtgatagggaaagaaagttaagggaaagaagcactttccttagtttggaac |
180 |
Q |
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|||||||||||||| |||||||||| | ||| |||||| | |||||||||| |||||||| ||||||||||| |
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| T |
925350 |
gtgtttgtttctatggaaagattgtaagcaggagagaaagattagggaaagaaacactttccatagtttggaac |
925423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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