View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_28 (Length: 434)
Name: NF9001_low_28
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 418
Target Start/End: Original strand, 39934694 - 39935099
Alignment:
| Q |
15 |
gacatggaaacattat--gcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcc |
112 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| |
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| T |
39934694 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcc |
39934793 |
T |
|
| Q |
113 |
tattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaag |
212 |
Q |
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|||||| |||||||||||| | ||| | ||||| ||||||||||| ||| || ||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39934794 |
tattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaag |
39934893 |
T |
|
| Q |
213 |
acaataacagaaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934894 |
acaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
39934993 |
T |
|
| Q |
313 |
ttggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcat |
412 |
Q |
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| T |
39934994 |
ttggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcat |
39935093 |
T |
|
| Q |
413 |
gtgatg |
418 |
Q |
| |
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|||||| |
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| T |
39935094 |
gtgatg |
39935099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 39695423 - 39695091
Alignment:
| Q |
11 |
cacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctact |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| || |
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| T |
39695423 |
cacagacatggaaacattatgcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgct |
39695324 |
T |
|
| Q |
111 |
cctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39695323 |
cctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatca |
39695224 |
T |
|
| Q |
211 |
agacaataacagaaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgc |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39695223 |
agactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagcaactttggattgc |
39695124 |
T |
|
| Q |
311 |
tattggagttgataggaatatacttgaagacca |
343 |
Q |
| |
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||||||||||| || |||||||||||||||||| |
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| T |
39695123 |
tattggagttgctaagaatatacttgaagacca |
39695091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 29 - 338
Target Start/End: Complemental strand, 39704317 - 39704008
Alignment:
| Q |
29 |
atgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggc |
128 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||| || ||| |
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| T |
39704317 |
atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggc |
39704218 |
T |
|
| Q |
129 |
ataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagacaataacagaaacag |
228 |
Q |
| |
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|||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||| || |||||||| ||| ||||||||||||| |
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| T |
39704217 |
ataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgactataacagaaacag |
39704118 |
T |
|
| Q |
229 |
aactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaa |
328 |
Q |
| |
|
||| |||||| ||||| |||||||||||||| || ||||||||| |||||||||||||||| || ||||||||||||||||||||||||| || ||| |
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| T |
39704117 |
aaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtcacactactttggattgctattggagttgctaagaa |
39704018 |
T |
|
| Q |
329 |
tatacttgaa |
338 |
Q |
| |
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|||||||||| |
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| T |
39704017 |
tatacttgaa |
39704008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 40 - 339
Target Start/End: Original strand, 39929069 - 39929368
Alignment:
| Q |
40 |
ctaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcatttt |
139 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | ||||| ||||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| |
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| T |
39929069 |
ctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattt |
39929168 |
T |
|
| Q |
140 |
cctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctggg |
239 |
Q |
| |
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||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
39929169 |
tctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctggg |
39929268 |
T |
|
| Q |
240 |
attttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaag |
339 |
Q |
| |
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|||| ||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||||| |||||||| |
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| T |
39929269 |
atttcaaaatggtatcctaaagaacgatccatgactaaagcttgaagtataatgaagtccatttgcattactattggaattgataggaatagacttgaag |
39929368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 39930479 - 39930553
Alignment:
| Q |
340 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39930479 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgt |
39930553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 39692847 - 39692770
Alignment:
| Q |
340 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgat |
417 |
Q |
| |
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| T |
39692847 |
accaaaaccaattgatattaacactatgcttatgtataaaactgtatattggattcctgttggtggtttgcatgtgat |
39692770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 39702820 - 39702742
Alignment:
| Q |
340 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatg |
418 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
39702820 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatg |
39702742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 38061739 - 38062001
Alignment:
| Q |
33 |
acatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggcatag |
132 |
Q |
| |
|
|||||| |||||||||| || |||| ||||||||||| || ||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38061739 |
acatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattcgttggagcggcatag |
38061838 |
T |
|
| Q |
133 |
gcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagac---aataacagaaacag |
228 |
Q |
| |
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|| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||||||| | || ||||||||| || |||||||||||||| |
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| T |
38061839 |
gcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacag |
38061938 |
T |
|
| Q |
229 |
aactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaa |
291 |
Q |
| |
|
||| |||||||||||||||||| | ||||| ||| |||||||||| |||| |||||||||||| |
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|
| T |
38061939 |
aaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtacaa |
38062001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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