View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_29 (Length: 431)
Name: NF9001_low_29
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_29 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 424
Target Start/End: Complemental strand, 31289948 - 31289542
Alignment:
| Q |
3 |
ttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
31289948 |
ttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcga------------tcgcgtc----------catagggaatcc |
31289871 |
T |
|
| Q |
103 |
tcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccatatctctgcactgccttca |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31289870 |
tcacaatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacacattctttttttggcactgatgtgagccatatctctgcactgccttca |
31289771 |
T |
|
| Q |
203 |
ataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatca |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31289770 |
ataattcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccgagaatatgttgcactctctggcaaccatttatca |
31289671 |
T |
|
| Q |
296 |
acatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31289670 |
acatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccat |
31289571 |
T |
|
| Q |
396 |
acagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31289570 |
acagtgttgtttctgctacacaggttctg |
31289542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 26652272 - 26651948
Alignment:
| Q |
4 |
tgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcct |
103 |
Q |
| |
|
||||||||||| ||| ||||||| |||| |||||||| |||||||||| | |||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
26652272 |
tgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcct |
26652173 |
T |
|
| Q |
104 |
cacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttca |
202 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| |||| || || ||||||||| |||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
26652172 |
cacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttca |
26652075 |
T |
|
| Q |
203 |
ataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatca |
295 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
26652074 |
ataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatca |
26651975 |
T |
|
| Q |
296 |
acatccagtacaggttgctgcagctgt |
322 |
Q |
| |
|
||||||| |||||||| |||||||||| |
|
|
| T |
26651974 |
acatccaatacaggtttctgcagctgt |
26651948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 26758240 - 26757916
Alignment:
| Q |
4 |
tgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcct |
103 |
Q |
| |
|
||||||||||| ||| ||||||| |||| |||||||| |||||||||| | |||| ||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
26758240 |
tgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcct |
26758141 |
T |
|
| Q |
104 |
cacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttca |
202 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| |||| || || ||||||||| |||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
26758140 |
cacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctgcactgccttca |
26758043 |
T |
|
| Q |
203 |
ataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaaccatttatca |
295 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
26758042 |
ataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggcaaccatttatca |
26757943 |
T |
|
| Q |
296 |
acatccagtacaggttgctgcagctgt |
322 |
Q |
| |
|
||||||| |||||||| |||||||||| |
|
|
| T |
26757942 |
acatccaatacaggtttctgcagctgt |
26757916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 27421174 - 27421403
Alignment:
| Q |
43 |
aacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtc |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||| |
|
|
| T |
27421174 |
aacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtc |
27421273 |
T |
|
| Q |
143 |
tcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatc |
241 |
Q |
| |
|
|| || | ||||| | ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| || |
|
|
| T |
27421274 |
tccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttc |
27421371 |
T |
|
| Q |
242 |
acagatcttgataacaacctttcaccgagaat |
273 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||| |
|
|
| T |
27421372 |
acagctcttgataacatcctttctctgagaat |
27421403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 27713873 - 27713960
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct |
423 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
27713873 |
aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct |
27713960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 26854035 - 26853949
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttc |
422 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
26854035 |
aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttc |
26853949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 26631815 - 26631744
Alignment:
| Q |
353 |
aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||| |
|
|
| T |
26631815 |
aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg |
26631744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 26737790 - 26737719
Alignment:
| Q |
353 |
aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||| |
|
|
| T |
26737790 |
aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg |
26737719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 26966477 - 26966390
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct |
423 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
26966477 |
aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct |
26966390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 27422333 - 27422412
Alignment:
| Q |
345 |
tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
27422333 |
tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg |
27422412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 26632813 - 26632715
Alignment:
| Q |
3 |
ttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| | || ||||||||||||| || |||| |||||| | ||||||||||||||||||| |||| |
|
|
| T |
26632813 |
ttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc |
26632715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 26738789 - 26738691
Alignment:
| Q |
3 |
ttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| | || ||||||||||||| || |||| |||||| | ||||||||||||||||||| |||| |
|
|
| T |
26738789 |
ttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc |
26738691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 26890823 - 26890735
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| ||| ||||| |||||| |
|
|
| T |
26890823 |
aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg |
26890735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 27651967 - 27652055
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| || ||||||||||||| ||||||| || |||||| |
|
|
| T |
27651967 |
aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctg |
27652055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
| Q |
201 |
caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt |
278 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| |||| |||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
26632711 |
caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt |
26632634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
| Q |
201 |
caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt |
278 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| |||| |||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
26738687 |
caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt |
26738610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 66189 - 65960
Alignment:
| Q |
43 |
aacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtc |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||| |
|
|
| T |
66189 |
aacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtc |
66090 |
T |
|
| Q |
143 |
tcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatc |
241 |
Q |
| |
|
|| || | ||||| | ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| | ||||||||||| || |
|
|
| T |
66089 |
tccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttc |
65992 |
T |
|
| Q |
242 |
acagatcttgataacaacctttcaccgagaat |
273 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||| |
|
|
| T |
65991 |
acagctcttgataacatcctttctctgagaat |
65960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 65030 - 64951
Alignment:
| Q |
345 |
tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
424 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
65030 |
tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg |
64951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 29269748 - 29269829
Alignment:
| Q |
345 |
tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgct |
426 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29269748 |
tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct |
29269829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 18071 - 17984
Alignment:
| Q |
336 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct |
423 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
18071 |
aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct |
17984 |
T |
|
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