View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9001_low_3 (Length: 733)

Name: NF9001_low_3
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9001_low_3
NF9001_low_3
[»] chr4 (1 HSPs)
chr4 (18-714)||(1422362-1423068)


Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 714
Target Start/End: Complemental strand, 1423068 - 1422362
Alignment:
Q  18 gttttgatttgttcatcacaagattaatttaaaaatatatttaacacaagtagtgactacgtcaaatctacttataattatgtcattatacaaatttcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1423068 gttttgatttgttcatcacaagattaatttaaaaatatatttaacacaagtagtgactacgtcaaatctacttataattatgtcattatacaaatttcat 1422969  T
Q  118 actttatgacaaatcctcttttagttttgtaattacaaatattttcaacttaagaattacgtacctttgaaatctccatagcnnnnnnnnnnnnnnnagc 217  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  1422968 actttatgataaatcctattttagttttgtaattacaaatattttcaacttaagaattacgtacctttgaaatctccatagcttttttttttt----agc 1422873  T
Q  218 aaaaattttcactgctcttaccaaacaaaataatgaaactttcatattttcctctctattctaatatattttcattcaaatcagggaactaaaacaannn 317  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  1422872 aaaaattttcattgctcttgccaaacaaaataatggaactttcatattttcctctctattctaatatattttcattcaaatcagggaactaaaacaattt 1422773  T
Q  318 nnnnnnn-aatttgagtttttattgcgttattaataaagggaaannnnnnnnaaagttaacataaattttacactaattaatgatcct-accgatggtgt 415  Q
            |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1422772 ttttttttaatttgagtttttattgcgttattaataaagggaatttttttttaaagttaacataaattttacactaattaatgatccttaccgatggtgt 1422673  T
Q  416 aaggtcttcattgtatcttttaaatatgtgatgaggatggtttttgttgcttcgccatctaccgttgcttggtt----ttggcgtgcatcaataatattt 511  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||    
T  1422672 aaggtcttcattgtatcttttaaagatgtgatgaggatggtttttgttgcttcgccatctaccgttgcttgcttgattttggcgtgcatcaataatattt 1422573  T
Q  512 ttcttatttcaacaactattgatttcttaaatttaattgtttgattccattctttagaggggaataaaagtggagggaaagg-------nnnnnnnntac 604  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||    
T  1422572 ttcttatttcaacaactattgttttcttaaatttaattgtttgattccattctttagaggggaataaaagtggagggaaaggaaaaaaaaaaaaaaaaac 1422473  T
Q  605 cttataaaccatattttacttgaagcacgtccttgctactgttgtagggtttacattatgga-nnnnnnnagaacgatttattgttaatgcgtgatataa 703  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||    
T  1422472 cttataaaccatattttacttgaagcacatccttgctactgttgtagggtttacattatggattttttttagaacgatttattgtcaatgcgtgatataa 1422373  T
Q  704 catttggtgtg 714  Q
     ||||||||||    
T  1422372 tatttggtgtg 1422362  T

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