View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_36 (Length: 382)
Name: NF9001_low_36
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_36 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0150 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 42552318 - 42551953
Alignment:
| Q |
17 |
atcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552318 |
atcatgttaacagagacattaatgctttgagcagcagaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
42552219 |
T |
|
| Q |
117 |
caaatcctacaacatacacacaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552218 |
caaatcctacaacatacacacaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaat |
42552119 |
T |
|
| Q |
217 |
agctatagctataacaatctacaaacaaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552118 |
agctatagctataacaatctacaaacaaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataatt |
42552019 |
T |
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| Q |
317 |
ttgttaaacaaacctgacaaatgaacatctgaatacctccttcaatgaaaagagttcttcttccaa |
382 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42552018 |
ttgttaaacaaacctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaa |
42551953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 1239002 - 1239108
Alignment:
| Q |
17 |
atcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
116 |
Q |
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||||||||||| || ||||| | |||||||| || || |||| ||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||| |
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| T |
1239002 |
atcatgttaaccgaaacattgacactttgagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatg |
1239101 |
T |
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| Q |
117 |
caaatcc |
123 |
Q |
| |
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| ||||| |
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| T |
1239102 |
cgaatcc |
1239108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 42517621 - 42517724
Alignment:
| Q |
17 |
atcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
116 |
Q |
| |
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|||||||||||||| ||||| | |||||||| || || || | ||||| || ||||| ||||| ||||||||||| | ||||||||||||||||||| |
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| T |
42517621 |
atcatgttaacagaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatg |
42517720 |
T |
|
| Q |
117 |
caaa |
120 |
Q |
| |
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|||| |
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| T |
42517721 |
caaa |
42517724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 18233895 - 18234129
Alignment:
| Q |
17 |
atcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
116 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || ||||||| ||| || || || || ||||| ||||||||||||| |||||||||||||||||||| |
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| T |
18233895 |
atcatgttaacagagacattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatg |
18233994 |
T |
|
| Q |
117 |
caaatcctacaacatacacacaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaat |
216 |
Q |
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|||||||| | || ||||||||||| ||||| ||||| ||||| ||||||||||||| || | | ||||||||||| |||||||| ||| ||||| |
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| T |
18233995 |
caaatcctgctacgtacacacaaatgcacataacaacaacaattgcataccactttggcaaaacgcctgggtcaccacttactccaaatttaagcgcaat |
18234094 |
T |
|
| Q |
217 |
agctatagctataacaatctacaaacaaaattcaa |
251 |
Q |
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| ||||||||||||||||| |||||||||||||| |
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| T |
18234095 |
aaatatagctataacaatctgcaaacaaaattcaa |
18234129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 18234198 - 18234256
Alignment:
| Q |
324 |
acaaacctgacaaatgaacatctgaatacctccttcaatgaaaagagttcttcttccaa |
382 |
Q |
| |
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||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
18234198 |
acaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaa |
18234256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 36202781 - 36202698
Alignment:
| Q |
41 |
ctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcct |
124 |
Q |
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|
|||||||| || |||||||| || | || |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| |
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| T |
36202781 |
ctttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcct |
36202698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 35922244 - 35922339
Alignment:
| Q |
19 |
catgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagacca |
114 |
Q |
| |
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|||||| ||||| ||||| | |||||||||||||| ||||| || | ||||| |||||||| | ||||||||||| ||||||||||| ||||| |
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| T |
35922244 |
catgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
35922339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 1473 - 1505
Alignment:
| Q |
226 |
tataacaatctacaaacaaaattcaaatttaat |
258 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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| T |
1473 |
tataacaatctacaaacaaaattcaaatttaat |
1505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 16639 - 16671
Alignment:
| Q |
226 |
tataacaatctacaaacaaaattcaaatttaat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16639 |
tataacaatctacaaacaaaattcaaatttaat |
16671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 30866226 - 30866258
Alignment:
| Q |
226 |
tataacaatctacaaacaaaattcaaatttaat |
258 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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| T |
30866226 |
tataacaatctacaaacaaaattcaaatttaat |
30866258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 131503 - 131471
Alignment:
| Q |
226 |
tataacaatctacaaacaaaattcaaatttaat |
258 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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| T |
131503 |
tataacaatctgcaaacaaaattcaaatttaat |
131471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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