View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_38 (Length: 377)
Name: NF9001_low_38
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 4194650 - 4195012
Alignment:
| Q |
6 |
agaagcagagacgaaacaaaagcaaaagccatatatacctttgattttatcacccaatattttggtttctgtttcttcaaatcatagagttttccacaat |
105 |
Q |
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| T |
4194650 |
agaagcagaaacgaaacaaaagcaaaagccatatatacctttgattttatcacccaatattttggtttctgtttcttcaaatcatagagttttccacaat |
4194749 |
T |
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| Q |
106 |
ttttggtttctaacctttttctaaaaatattctaaacatgtctggacaacgattttaccttgcc--------gaaacatcaattaatatatttgaatatt |
197 |
Q |
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| T |
4194750 |
ttttggtttctaacctttttctaaaaatattctaaacatgtctggacaacgattttaccttgccgttctaaggaaacatcaattaatatatttgaatatt |
4194849 |
T |
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| Q |
198 |
ctcttaccnnnnnnnnnattattattaattatgccgttgaagctcaggtattttaattgtggagaagtggatatataaagttcgaaatccgatctttcat |
297 |
Q |
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| T |
4194850 |
ctcttaccttttttttt-ttttaattaattatgcagttgaagcttaggtattttaattgtggagaaatggatatataaagttcgaaatccggtctttcat |
4194948 |
T |
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| Q |
298 |
caattttatatagtcaacatttcattttctctttaactttttctatccatcacattatcaattt |
361 |
Q |
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| T |
4194949 |
caattttatatagtcaacatttcattttctctttaactttttctatccatcacattatcaattt |
4195012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 4226071 - 4226114
Alignment:
| Q |
316 |
atttcattttctctttaactttttctatccatcacattatcaat |
359 |
Q |
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| T |
4226071 |
atttcatttgatctttatctttttctatccatcacattatcaat |
4226114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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