View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_40 (Length: 376)
Name: NF9001_low_40
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 54201471 - 54201829
Alignment:
| Q |
17 |
acttgggtaagtagctagcttataaattaggcgacatgtttatttttgaggaagttagatcctcgacaaacggctttatggtgcagccggttgcaggctg |
116 |
Q |
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| T |
54201471 |
acttgggtaagtagctagcttataaattaggcgacatgtttatttttgaggaagttagatcctcgacaaacggctttatggtgcagccggttgcaggctg |
54201570 |
T |
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| Q |
117 |
tcaagagaaaaatatctctcttaatttaacggctaacaactgactgcactttaaaatcgactatagatactataaatgagacgcgaatttcaatttttag |
216 |
Q |
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| T |
54201571 |
tcaagagaaaaatatctctcttaatttaacggctaacaactgactacactttaaaatcgactatagatactataaatgagacgcaaatttcaatttttag |
54201670 |
T |
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| Q |
217 |
ttggctaattcaaaggatttgtatttacacaaatattaattgtaattattttgaaaactcagtatgagtttacaatcacatcttgcttccatgagaactt |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54201671 |
ttggctaattcaaaggatttgtatttacac-aatattaattgtaattattttgaaaactcagtatgagtttacaatcacatcttgcttccatgagaactt |
54201769 |
T |
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| Q |
317 |
gccactaatagtgacaagggttgtccttggggtagccttacaagtcctatgcagttacat |
376 |
Q |
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| T |
54201770 |
gccactaatagtgacaagggttgtccttggggtagccttacaagtcctatgcagttacat |
54201829 |
T |
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