View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_41 (Length: 374)
Name: NF9001_low_41
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 18459726 - 18460085
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18459726 |
gggattcacggatttggcatttccgtcatcatgcgcatcttcaagtaaaagaagcgtcaacacaataggaggttcattctaaggtggatcatcatgtggg |
18459825 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtcaaaa-atgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||| |||||| ||||||||||| |
|
|
| T |
18459826 |
gcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccgaaattcaaaatccggaac |
18459925 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgcc-nnnnnnncgaatgggggaaggtt |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
18459926 |
gcatgaatgcagtccggatttgaaattccagaacgtttcagtacagatcatatgacgtgatcaaaaggaaatcgccaaaaaaaacaaatgggggaaggtt |
18460025 |
T |
|
| Q |
299 |
tattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460026 |
tattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
18460085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 24133346 - 24133438
Alignment:
| Q |
252 |
tgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
347 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24133346 |
tgacatgatcaaaaggaaagcgcctagaaatcgaatgagggaaggtttat---atacacattacctttgaattcagtcgaaaatgatgatgttaac |
24133438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 6162010 - 6162364
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
6162010 |
gggattctcggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcagcaacacaataggaggttcattctgaggtggatcatcatttagg |
6162109 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
| ||||| |||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| | ||| ||| |||||||| |||| |
|
|
| T |
6162110 |
ggatcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaatccagaac |
6162209 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||||||| ||||||| | ||||| |||| | || | | |||||| ||||||||||||| ||||||| ||| | ||| ||||| |
|
|
| T |
6162210 |
gcatgaatgcagaccggatttaacattccggaacagtacaatgaatatcatacaacgtgatcaaaagttaatcgcctaaaaatcgactagggaaaggt-- |
6162307 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat |
357 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
6162308 |
-ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat |
6162364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 52972407 - 52972762
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||| |||||||||| ||| |||| |
|
|
| T |
52972407 |
gggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagagacaacacattaggatgttcaatctcaggtggatcaacatttggg |
52972506 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||| | ||| ||| ||||| | || ||||| |||||||||||||||||| | |||| ||||| | ||| ||||||||||| |
|
|
| T |
52972507 |
gcatcaaccaaaacaaccatatctgtaaacagtgc-agacatagtcagaaaatgaacacagtttctgtattggtgcagtccagatttcaaaatccggaac |
52972605 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgt-ttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaat-gggggaaggt |
297 |
Q |
| |
|
|||||||| |||| | ||||| | | ||| |||| | | |||| | |||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
52972606 |
gcatgaatccagtccagattttacagtcc-gaacatgtagagtacaaatcatatgacgtgatcaaaaagaaatcgcctaaaaaacgaatggggggaaggt |
52972704 |
T |
|
| Q |
298 |
ttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52972705 |
---ttatacacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
52972762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 54586667 - 54586320
Alignment:
| Q |
9 |
cggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaag |
108 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||||||| ||||||||| ||| || ||||| ||| || ||||||||||| ||||||||||| |
|
|
| T |
54586667 |
cggatttggcatttcccgaattatgcacatcttcaagtaaaagaaccggcaacacgatatgatgttcaatctcagctggatcatcatttggggcatcaac |
54586568 |
T |
|
| Q |
109 |
aggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaat |
207 |
Q |
| |
|
||||||||| | |||||||| | ||||||||||||||| |||||||||| | ||| | |||||| |||| | | | | |||||| ||| |||||| |
|
|
| T |
54586567 |
cggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaacataatttttgtactggtgttgttcggattactaaatcctaaacatatgaat |
54586468 |
T |
|
| Q |
208 |
gcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatata |
307 |
Q |
| |
|
||||| | || || | || | || | ||||| ||||| |||||||||||||||||||||| ||| |||||||| ||| | ||||||| |
|
|
| T |
54586467 |
gcagtcccgaatttatttttcggataaatccagtacagatcgtatgacgtgatcaaaaggaaattgcctaaaaaacgaatgggagaa---attttatata |
54586371 |
T |
|
| Q |
308 |
cacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
54586370 |
cacactacctttgcattcagacgaaaatgatgatgttaaccccccttgatg |
54586320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 23710494 - 23710848
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||| |||||||| | | |||||||||||||| |||| |
|
|
| T |
23710494 |
gggattctcagatttggcattcccggaatcatacacatcttcaagtaaaagaagcggcaacataatatgaggttcaatttcaggtggatcatcatttggg |
23710593 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| | ||||||| | || |||| |||| | ||| ||||| |||||||||| ||||| | |||||| ||| | ||||||||||||||||| |
|
|
| T |
23710594 |
gcatcaaccgaaacaaccatatctaaaaacagtgtcatgcatagtcagaaaatgaacatagtttatgtactggtgcagtctagaattcgaaatccggaac |
23710693 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
||||||||||||| || |||| | |||| ||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23710694 |
gcatgaatgcagtccgaatttcatattctggaacgttacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggggaaggt-- |
23710791 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgat |
357 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23710792 |
-ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccccttgat |
23710848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 754337 - 753988
Alignment:
| Q |
12 |
atttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaagagg |
111 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||| ||| ||||||||||| || |
|
|
| T |
754337 |
atttggcattcccggaatcatgtgcatcttcaagtaaaagaagcagcaacacaatagaaggttcaatcttaggtggatcagcatttggggcatcaaccgg |
754238 |
T |
|
| Q |
112 |
aacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgca |
210 |
Q |
| |
|
||||||| | || |||| | || | ||| ||| | |||||||||||||||||| ||||| || | ||| ||||| |||||||||||||||| |
|
|
| T |
754237 |
aacaaccatatctaaaaacattgacaggcatagttagaaaatgaacacagtttctgtgctggtgcactctggatttcaaaatctggaacgcatgaatgca |
754138 |
T |
|
| Q |
211 |
gttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacac |
310 |
Q |
| |
|
|| ||||||| | |||| ||||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
754137 |
gtccggatttcatattctggaacggtacagtacagatcatatgaagtgatcaaaaggaaatcgcctaaaaaacgaatgggggaaggt---ttatatacac |
754041 |
T |
|
| Q |
311 |
attacctttgcattcagtcgaaaatgatgatgttaacctcccttgatgtccat |
363 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |||| ||||||||| |||| |
|
|
| T |
754040 |
attatctttgcattcagtcaaaaatgatgatgtcaaccccccttgatggccat |
753988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 9173694 - 9174034
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||| |||||||||| ||| |||| |
|
|
| T |
9173694 |
gggattctcggatttggcattaccggaatcatgcgtatcttcaagtaaaagaagtggcaacacattaggatgttcaatctcaggtggatcaacatttggg |
9173793 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||| ||| ||||| | ||||||| ||||| | ||| ||||| |||||||||| ||||||| |||||| ||| | || |||||||||||| |
|
|
| T |
9173794 |
atatcaaccggagcaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacatagtttctgtactggtgcagtctggattttgaaatccggaac |
9173892 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| ||| ||| || || | |||| ||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
9173893 |
gcatgaatccag--------------tccggaccggtagagtacagatcatatgacgtgatcaaaagaaaatctcctaaaaaacgaatgggggaaggt-- |
9173976 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
9173977 |
-ttatatacacattacctttgcattcagtcaaaaatgatgatgttaaccccctttgatg |
9174034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 358
Target Start/End: Complemental strand, 14822616 - 14822461
Alignment:
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||| ||| ||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
14822616 |
gcatgaatgcagtccggatttaattttccggaatgttccagtacggatcatatgatgtgattaaaaggaaatcgcttaaaattcgaatgggggaaggttt |
14822517 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|| ||||||||||||||| |||| || | |||||||||||||||||| ||||||||| |
|
|
| T |
14822516 |
at---atacacattacctttacatttagacaaaaatgatgatgttaaccccccttgatg |
14822461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 9710464 - 9710572
Alignment:
| Q |
246 |
atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta |
345 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9710464 |
atcatatgacatgatcaaaagaaaattgcctaaaaaatgaatgggggaaggtt----atatacacattacctttgcattcagtcgaaaatgatgatgtta |
9710559 |
T |
|
| Q |
346 |
acctcccttgatg |
358 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
9710560 |
accccccttgatg |
9710572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 38619519 - 38619165
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| || | |
|
|
| T |
38619519 |
gggattctcggatttggcattaccggaatcatgcgcgtcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcaggtggatcaacatttgag |
38619420 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||| | | ||| |||| ||||||||||||||||||| |||||| ||| | | |||||||||| ||| |
|
|
| T |
38619419 |
gcatcaatcggaacaaccatatctgaaaacagtac-aggcatagtcaaaaaatgaacacagtttctgtactggtgcagtctagatttcgaaatccataac |
38619321 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| | ||| ||| ||||| |
|
|
| T |
38619320 |
gcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaattgggaaaggt-- |
38619223 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38619222 |
-ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
38619165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 17312498 - 17312844
Alignment:
| Q |
9 |
cggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaag |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| ||| ||||||||||| |
|
|
| T |
17312498 |
cggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggatgttcaatctcaggtggatcaacatttggggcatcaac |
17312597 |
T |
|
| Q |
109 |
aggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaat |
207 |
Q |
| |
|
|||||||| | ||||||| ||||| ||||| ||||| |||||||||||||||||| |||||| |||| | ||||||||| | ||| | |||| |
|
|
| T |
17312598 |
cagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttctgtactggtgcagtccggatttcgaaatctgaaacacgtgaac |
17312696 |
T |
|
| Q |
208 |
gcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatata |
307 |
Q |
| |
|
|||||||||||| | | || || || | |||| | |||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
17312697 |
ccagttcggatttcagagtctggaccggtagagtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggagaaggt---ttatata |
17312793 |
T |
|
| Q |
308 |
cacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
17312794 |
cacattacctttgcattcagtcgaaaatgatgatgttaaccccctttgatg |
17312844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 9635708 - 9635351
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
9635708 |
gggattctcggatttggcattttcggaatcatgcacatcttcaagtaaaagaaccggcaacacaataggaggatcaatctcaggtggatcatcatttggg |
9635609 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||| |||||||| | |||||| |||| | | | ||||| | || |
|
|
| T |
9635608 |
gcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagtttttgtactggtgttgttcggattaaaaaatctgaaat |
9635509 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
||||||||||||| | ||||| | || | | | | ||||| ||||||||||||||||||||||||||| |||| | ||| |||||||| |
|
|
| T |
9635508 |
gcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctaaaattcaaataagggaaggt-- |
9635411 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatga--tgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9635410 |
-ttatatacacattatctttgcactcagatgaaaatgatgatgtgttaacctcccttgatg |
9635351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 19991633 - 19991679
Alignment:
| Q |
301 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19991633 |
ttatatacacattacctttgcattcattcgaaaatgatgatgttaac |
19991679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 26262739 - 26262693
Alignment:
| Q |
301 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
347 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
26262739 |
ttatatacacattacctttgcattcagacaaaaatgatgttgttaac |
26262693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 41257321 - 41257665
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||| ||| |||| |
|
|
| T |
41257321 |
gggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaacgcattaggaggttcaatctcaggtggatcaacatttggg |
41257420 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||||| | ||| ||||| ||||| |||||||||||| |||||| |||| | |||||||||| |||| |
|
|
| T |
41257421 |
gcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccggatttcgaaatccagaac |
41257519 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| || | | |||| | | ||| || | | ||||| | |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
41257520 |
gcatgaatccaatccagattgcatagtccgaaaaggtacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggt-- |
41257617 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41257618 |
-ttatatacacattacctttgcattcagtcgaaaatgatgatgttaacc |
41257665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 19215802 - 19215449
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||| |||||||||| ||| |||| |
|
|
| T |
19215802 |
gggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcattaagaggttcagtctcaggtggatcaacatttggg |
19215703 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| | ||| ||||| |||||| ||||||||||| |||| | || || | |||||| |||||||| |
|
|
| T |
19215702 |
gcatcaaccggaacaaccacatctgaaaacagtgc-aggcatagtcagaaaatg-acacagtttctgtactgatgcagttcagatttcgaactccggaac |
19215605 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| |||| |||||| | | ||| ||| | | || || ||||||||||||||||||||||| |||| ||| | ||||||||||||| |
|
|
| T |
19215604 |
gcatgaatccagtccggattgcatagtcctgaaaggtacaatacagatcatatgacgtgatcaaaagaaaattgcctaaaaaactaatgggggaaggt-- |
19215507 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19215506 |
-ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
19215449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 15889443 - 15889269
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| || |||||| | ||| ||||||||| |||||||||||||||||| | |||| | |||||| ||||| ||| || ||||||||||| |||| |
|
|
| T |
15889443 |
gggattctcgaatttggaaattcaagaatcatgcacatcttcaagtaaaagaaccagcaaagcgataggatgttcaatctcagctggatcatcatttggg |
15889344 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggtt |
174 |
Q |
| |
|
||||||| ||||||||| | |||||||| ||||| |||| ||||| |||||||||| ||||||| ||||||| |
|
|
| T |
15889343 |
gcatcaaccggaacaaccataactgaaaacagtgccaagcttagtcagaaaatgaacatagtttctgtactggtt |
15889269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 50515606 - 50515252
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || | | ||||||| ||| |||||||||| ||| |||| |
|
|
| T |
50515606 |
gggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcggcaatgcatttgaaggttcaatctcaggtggatcaacatttggg |
50515507 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtc-aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
| ||||| ||||||||| | |||||| ||||| | ||| |||| ||||||||||||||||| | |||||| | |||| | |||||| ||||||| |
|
|
| T |
50515506 |
gtatcaaccggaacaaccatatatgaaaacagtgc-atgcatagtcaaaaaatgaacacagtttttgtactggtgtagtccggatttcgaattccggaaa |
50515408 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
50515407 |
gcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaatggggaaaggt-- |
50515310 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50515309 |
-ttatatacacattacctttgcattcagtcgaaaatgatgatgttaaccccccttgatg |
50515252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 44713061 - 44713415
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| | ||| ||||||| ||| |||||||| ||||||||||||||| ||| ||||||||| ||||||||| | ||| | |||||||| ||| |||| |
|
|
| T |
44713061 |
gggattctcagatatggcattaccgtaatcatgcacatcttcaagtaaaataagtggcaacacattaggaggttgaatctcatgtggatcaacatttggg |
44713160 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| | ||||||| | ||| | ||| ||||| |||||||||||||||| | |||||| |||| || ||| || ||||||| |
|
|
| T |
44713161 |
gcatcaaccggaacaaccatatctgaaaacaatgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtcctaatttctaactccggaat |
44713259 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| ||| | |||| | | ||| ||| | | ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
44713260 |
gcatgaatctagtccagattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggttt |
44713359 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44713360 |
at---atacacattacctttgcattcaaccgaaaatgatgatgttaaccccccttgatg |
44713415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 358
Target Start/End: Original strand, 45910454 - 45910727
Alignment:
| Q |
82 |
aggtggatcatcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtcc |
180 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
45910454 |
aggtggatcaacatttggggcattaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttctgtactggtgcagtcc |
45910552 |
T |
|
| Q |
181 |
aaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnn |
280 |
Q |
| |
|
|| |||||| ||| |||||||||||| |||| |||||| | | ||| ||| | | ||||| |||||||||||| |||||||||||||||| || |
|
|
| T |
45910553 |
gaatttcgaactccagaacgcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacatgatcaaaaggaaatcacctaaaa |
45910652 |
T |
|
| Q |
281 |
nncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
45910653 |
aatgaatggggaaaggt---ttatatatacattacctttgcattcagtcaaaaatgatgatgctaaccccccttgatg |
45910727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 16768021 - 16768066
Alignment:
| Q |
301 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16768021 |
ttatatacacattacctttgcattcagtcgagaatgatgatgttaa |
16768066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 10548379 - 10548339
Alignment:
| Q |
307 |
acacattacctttgcattcagtcgaaaatgatgatgttaac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10548379 |
acacattacctttgcattcagtcgaaaatgatgatgttaac |
10548339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 6851381 - 6851438
Alignment:
| Q |
301 |
ttatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| || ||||||||| |
|
|
| T |
6851381 |
ttatatacacattacctttgcagtcagacgaaaatgatgatgtttacaccccttgatg |
6851438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 13850679 - 13851022
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| |||| |
|
|
| T |
13850679 |
gggattctcggatttggcattaccgaaatcatgcgcatcttcaagtaaaagaagcggcaacacattaggaggttaaatctcaggtggatcaacatttggg |
13850778 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| | || |||| | ||| | ||| ||||| |||||||||||||||||| |||||| |||| | | |||| ||||||| |
|
|
| T |
13850779 |
gcatcaactggaacaaccatatctaaaaacaatgc-atgcatagtcagaaaatgaacacagtttctgtactggtgcagtccggattacgaactccggaaa |
13850877 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
||||||| |||| |||||| | | ||| ||| | | ||||| | |||||||||||||||||||||||||||||| |||||||||||| | | |
|
|
| T |
13850878 |
ccatgaatccagtgcggattgcatagtccggaaaggtacagtacaaatcatatgacgtgatcaaaaggaaatcgcc-taaaaacgaatgggggaaaggt- |
13850975 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13850976 |
-ttatatacacattacctttgcattcagtcgaaaatgatgatgttaac |
13851022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 25761502 - 25761158
Alignment:
| Q |
11 |
gatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggggcatcaagag |
110 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||||| ||| |||||||||| ||| ||||||||||| | |
|
|
| T |
25761502 |
gatttggcattaccggaaccatgcgcatcttcaagtaaaagaagcggaaacgcattaggaggttcaatctcaggtggatcaacatttggggcatcaaccg |
25761403 |
T |
|
| Q |
111 |
gaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgc |
209 |
Q |
| |
|
|||||||| | ||||||| ||||| | ||| ||||| |||||||||||||||| | |||||| |||| | |||||| |||||||||||||||| | |
|
|
| T |
25761402 |
gaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccggatttcgaactccggaacgcatgaatcc |
25761304 |
T |
|
| Q |
210 |
agttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatataca |
309 |
Q |
| |
|
||| ||||| | | ||| ||| | | ||||| | ||||||||||||||||||||| |||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
25761303 |
agtctggattgcatagtccggaaaggtacagtacatatcatatgacgtgatcaaaagaaaatagcctaaaaaatcaatggggaaaggt---ttatataca |
25761207 |
T |
|
| Q |
310 |
cattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
25761206 |
cattacctttgcattcagtcaaaaatgatgatgttaaccccccttgatg |
25761158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 38965920 - 38965566
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||| || ||||||||||| |||| |
|
|
| T |
38965920 |
gggattctcggatttggcaattctggaatcatgcacatcttcaagtaaaagaaccggcaacatgataggatgttcaatctcagctggatcatcatttggg |
38965821 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||||||||| | | ||||| ||||| ||||| ||||| |||||||||||||||||| |||||| | |||| | |||||||||| ||| |
|
|
| T |
38965820 |
gcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatttcgaaatccagaat |
38965721 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
||||||||| ||| |||| || |||| |||| |||||| | |||||||||| |||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
38965720 |
gcatgaatgtagtccggaattcgttttccggaac-agtcagtacatatcatatgacatgatcaaaagaaaatcgcctaaaaaacgaatggaggaaggt-- |
38965624 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
38965623 |
-ttatatacacattacatttgaattcagacgaaaatgatgatgttaatcccccttgatg |
38965566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 20236139 - 20236491
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| || |||||||||| ||||||| || |||||||||||||||||||||| || ||||| |||||| | || | | ||||||| | ||| |||| |
|
|
| T |
20236139 |
gggattctcgtatttggcattaccggaataatacgcatcttcaagtaaaagaagccgcgacacattaggagatccaatatctggtggattaacatttggg |
20236238 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaac |
199 |
Q |
| |
|
||||||| ||| |||| | ||||||| ||||| | ||| ||||| |||||||||| | ||| | |||||| |||| | ||||||||||||||| |
|
|
| T |
20236239 |
gcatcaaccggagcaacatat-ctgaaaacagtgc-aggcatagtcagaaaatgaacataatttatgtactggtgcagtccggatttcgaaatccggaac |
20236336 |
T |
|
| Q |
200 |
gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt |
299 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| || | | || | |||||||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
20236337 |
gcatgaatccagttcggatttcaaagtccggatctgaagattacatatcatatgacgtgatcaaaaggaaatcgcctaaaaa-caaatcggggaaggttt |
20236435 |
T |
|
| Q |
300 |
attatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg |
358 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20236436 |
at---atacacattaccttagcattcagtcgaaaatgatgatgttaaccccccttgatg |
20236491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 34833860 - 34834024
Alignment:
| Q |
1 |
gggattcacggatttggcatttccggaatcatgcgcatcttcaagtaaaagaagcggcaacacaataggaggttcattctgaggtggatcatcatgtggg |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||| || |||| |
|
|
| T |
34833860 |
gggattctcggatttggcattaccggaatcatgcgcatcttcaagtaaaagaagcagcaacgcattaggaggttcaatcttaggtagatcaaaatttggg |
34833959 |
T |
|
| Q |
101 |
gcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttct |
165 |
Q |
| |
|
||||||| ||||||||| | ||||||| ||||| | | | ||||| |||||||||||||||||| |
|
|
| T |
34833960 |
gcatcaatcggaacaaccatatctgaaaacagtgc-atgtatagtcagaaaatgaacacagtttct |
34834024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 23352198 - 23352307
Alignment:
| Q |
246 |
atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgtta |
345 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352198 |
atcatatgacgtgatcaaaaggaaattgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgtta |
23352294 |
T |
|
| Q |
346 |
acctcccttgatg |
358 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
23352295 |
accgcccttgatg |
23352307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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