View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_45 (Length: 370)
Name: NF9001_low_45
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 26550418 - 26550085
Alignment:
| Q |
18 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc |
117 |
Q |
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| T |
26550418 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc |
26550319 |
T |
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| Q |
118 |
aaggctcttattcaagctggagggttcccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26550318 |
aaggctcttattcaagctggagggtttccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac |
26550219 |
T |
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| Q |
218 |
ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattacttggccttgagaggta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26550218 |
ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattacttggccttgagaggta |
26550119 |
T |
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| Q |
318 |
agataattcagttatgctgacttggtgtctagtt |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26550118 |
agataattcagttatgctgacttggtgtctagtt |
26550085 |
T |
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