View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_46 (Length: 365)
Name: NF9001_low_46
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 9867349 - 9867671
Alignment:
| Q |
29 |
ataatactataagtgttacttatatttaaattgattaatatatttaatttatcttgaatcacataccttgttcaaggatttcctaaaatctggtgaaaga |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867349 |
ataatactataagtgtta-ttatatttaaattgattaatatatttaatttatcttgaatcacataccttgttcaaggatttcctaaaatctggtgaaaga |
9867447 |
T |
|
| Q |
129 |
agattgttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgtacaaaac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867448 |
agattgttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgtacaaaac |
9867547 |
T |
|
| Q |
229 |
ccatctttgcttttaatttacttgtgctgcaactgaactatactatacacacttcatatgtttgctgcttaatctgagcact---ctttgaatttatttg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
9867548 |
ccatctttgcttttaatttacttgtgctgcaactgaactatactatacacacttcatatgtttgctgcttaatctgaacactttactttgaatttatttg |
9867647 |
T |
|
| Q |
326 |
tataggtgagaaagatgaatgatt |
349 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9867648 |
tataggtgagaaagatgaatgatt |
9867671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 9878738 - 9879063
Alignment:
| Q |
29 |
ataatactataagtgttacttatattta----aattgattaata---tatttaatttatcttgaatcacataccttgttcaaggatttcctaaaatctgg |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9878738 |
ataatactataagttttacttatatttatttaaattgattaatactatatttaatttaccttgaagcacataccttgttcaaggatttcctaaaatctgg |
9878837 |
T |
|
| Q |
122 |
tgaaagaagattgttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9878838 |
tgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagtaagacttgaataactggcatagaagccacttccaaaagttgt |
9878937 |
T |
|
| Q |
222 |
acaaaacccatctttgcttttaatttacttgtgctgcaactgaactatactatacacacttcatatgtttgctgcttaatctgagcactctttgaattta |
321 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
9878938 |
acaaaacccatctttgcttttgattttcttgtgctgcaactgaactatactatacacacttcatatggttgctgcttaatctga--acactttgaattta |
9879035 |
T |
|
| Q |
322 |
tttgtataggtgagaaagatgaatgatt |
349 |
Q |
| |
|
||| | |||||||||||||||||||||| |
|
|
| T |
9879036 |
tttctgtaggtgagaaagatgaatgatt |
9879063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 348
Target Start/End: Original strand, 9898779 - 9899108
Alignment:
| Q |
31 |
aatactataagtgttacttatatttaaattgattaatatatttaatttatcttgaa------tcacataccttgttcaaggatttcctaaaatctggtga |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9898779 |
aatactataagtgttacttatatttaaattgattaatatatttaatttagcttgaaattgaatcacttaccttgttcaaggatttcctaaaatctggtga |
9898878 |
T |
|
| Q |
125 |
aagaagattgttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgtaca |
224 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9898879 |
aagaagattattgaaatactgagtggccatgaaagctcccaatgcactaacaagtaagacttgaataactggcatagaagccacttccaaaagttgtaca |
9898978 |
T |
|
| Q |
225 |
aaacccatctttgcttttaatttac---ttgtgctgcaactgaactatactatacacacttcatatgtttgctgcttaatctgagcact---ctttgaat |
318 |
Q |
| |
|
|||||||||||| ||||| |||| | |||||||||||||||| ||||||||||||||||| | | ||||||||| ||||||| |||| |||||||| |
|
|
| T |
9898979 |
aaacccatcttttcttttgattttcttattgtgctgcaactgaattatactatacacacttcttgtatttgctgctgaatctgaacactttactttgaat |
9899078 |
T |
|
| Q |
319 |
ttatttgtataggtgagaaagatgaatgat |
348 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |
|
|
| T |
9899079 |
ttatttctgtaggtgagaaagatgaatgat |
9899108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 9863292 - 9863080
Alignment:
| Q |
36 |
tataagtgttac-ttatatttaaattgattaatatatttaatttatcttgaatcacataccttgttcaaggatttcctaaaatctggtgaaagaagattg |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9863292 |
tataagtgttaccttatatttaaattgattaatatatttaatctaacttgaatcccttaccttgttcaaggatttcctaaaatctggtgaaagaagattg |
9863193 |
T |
|
| Q |
135 |
ttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgtacaaaacccatct |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
9863192 |
ttgaaatactgagtagccatgaaagctcccaatgcactaataagtaggacttgaataactggcatggaagccacttccaaaagttgtataaaacccatct |
9863093 |
T |
|
| Q |
235 |
ttgcttttaattt |
247 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
9863092 |
ttgattttgattt |
9863080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 9909089 - 9909285
Alignment:
| Q |
51 |
tatttaaattgattaatatatttaatttatcttgaatcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtag |
150 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9909089 |
tatttaaattgattaatatatttaatctagcttgaatccgttaccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtag |
9909188 |
T |
|
| Q |
151 |
ccataaaagctcccaatgcactaacaagcaagacttgaataactggcatagtagccacttccaaaagttgtacaaaacccatctttgcttttaattt |
247 |
Q |
| |
|
|||| ||||||||||||||||||| ||| | |||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
9909189 |
ccatgaaagctcccaatgcactaataagtaggacttgaataactggcatggaagccacttccaaaagttgtagaaaacccatctttgattttgattt |
9909285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 7914250 - 7913997
Alignment:
| Q |
96 |
ttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagctcccaatgcactaacaagcaagacttgaataactg |
195 |
Q |
| |
|
|||||||||||||| ||||| |||| | |||||||||| |||||||| ||||||||||||||||||| ||||||||||| || | ||||| ||| ||| |
|
|
| T |
7914250 |
ttgttcaaggattttctaaagtctgctaaaagaagattattgaaatattgagtagccataaaagctctcaatgcactaattagtaggactttcatagctg |
7914151 |
T |
|
| Q |
196 |
gcatagtagccacttccaaaagttgtacaaaacccatctttgcttttaatttacttgtgctgcaactgaactatac--tatacacacttcatatgtttgc |
293 |
Q |
| |
|
||||| |||||| |||||||||| || ||| | |||||| ||||| ||| ||||||||||| |||||| |||| |||||||||||| | |||||| |
|
|
| T |
7914150 |
gcataaaagccacatccaaaagttctataaaccttatcttt-cttttgcttttcttgtgctgcagctgaacaatactatatacacacttcttgtgtttgt |
7914052 |
T |
|
| Q |
294 |
tgcttaatctgagcact---ctttgaatttatttgtataggtgagaaagatgaat |
345 |
Q |
| |
|
|||| ||||||| | || |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
7914051 |
tgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaat |
7913997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University