View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_48 (Length: 363)
Name: NF9001_low_48
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 34577802 - 34577469
Alignment:
| Q |
14 |
atcaaaatacctctggtagggtacgaaaggaggttacaagtaaaaaatgtgaataagaaaacaaattgatgcacaataaataatacagacatttaagttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577802 |
atcaaaatacctctggtagggtacgaaaggaggttacaagtaaaaaatgtgaataagaaaacaaattgatgcacaataaataatacagacatttaagttt |
34577703 |
T |
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| Q |
114 |
gcattaagatgataaaacatgtaagtaattcatgtgattaagaaagtgataaaatgacacaagttagaagtcaaaaagggnnnnnnnnttgctagtgtaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34577702 |
gcattaagatgataaaacatgtaagtaattcatgtgattaagaaagtgataaaatgacacaagttagaagtcaaaaagggaaaaaaaattgctagtgtaa |
34577603 |
T |
|
| Q |
214 |
aaaacccactgattgtgttctttaatatcatctatataacctactgaaagtatgataggttgtacaccatttccgctttgacaactatgggttgtacacc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34577602 |
aaaacccactgattgtgttctttaatatcatctatataacctactgaaagtatgataggttgtgcaccatttccgctttgacaactatgggttgtacacc |
34577503 |
T |
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| Q |
314 |
attaccacaaagaccagaaacatacgcaagatgt |
347 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34577502 |
attaccacaaagaccagaaacatacgcaagatgt |
34577469 |
T |
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