View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_49 (Length: 360)
Name: NF9001_low_49
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 388400 - 388721
Alignment:
| Q |
19 |
acgctgagcttcacaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgaggtttgagaatattagtga |
118 |
Q |
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| T |
388400 |
acgctgagcttcacaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgaggtttgagaatattagtga |
388499 |
T |
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| Q |
119 |
tggaagtgaaaaaatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatatttttgttggaggagggaaaaagagacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
388500 |
tggaagtgaaaaaatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatattt---ttggaggagggaaaaagagacat |
388596 |
T |
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| Q |
219 |
aataataagatcacaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatcataataatcctctttatg |
318 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388597 |
aataataagagcacaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatcataataatcctctttatg |
388696 |
T |
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| Q |
319 |
cttctcctttttaattaatgtatct |
343 |
Q |
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||||||||||||||||||||||||| |
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| T |
388697 |
cttctcctttttaattaatgtatct |
388721 |
T |
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