View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_50 (Length: 352)
Name: NF9001_low_50
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 27430357 - 27430027
Alignment:
| Q |
16 |
catcatacttgtagaatcttgcaaagccctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacac |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430357 |
catcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacac |
27430258 |
T |
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| Q |
116 |
cagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430257 |
cagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcc |
27430158 |
T |
|
| Q |
216 |
tccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430157 |
tccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtc |
27430058 |
T |
|
| Q |
316 |
aacattcctgatatcatgtatgatgatgtcc |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27430057 |
aacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 346
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
172 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
271 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
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| Q |
272 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
346 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 27447604 - 27447476
Alignment:
| Q |
16 |
catcatacttgtagaatcttgcaaagccctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacac |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27447604 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
27447505 |
T |
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| Q |
116 |
cagccaaacaagattgcccttttctctca |
144 |
Q |
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||||||||||||| || |||||||||||| |
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| T |
27447504 |
cagccaaacaagactgtccttttctctca |
27447476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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