View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_53 (Length: 347)
Name: NF9001_low_53
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 103 - 328
Target Start/End: Original strand, 37715708 - 37715933
Alignment:
| Q |
103 |
gcatacttttctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37715708 |
gcatacttttctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatatagcatttgt |
37715807 |
T |
|
| Q |
203 |
agttaactgatgatcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcctatggttctatctttgagttaggtggtgc |
302 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37715808 |
agttaacagatgatcaattaataataagcaaagtcgtccaaacatgttactgcacccgcaccgctcgatcctatggttctatctttgagttaggtggtgc |
37715907 |
T |
|
| Q |
303 |
agatctcaaatatgaggggattcata |
328 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37715908 |
agatctcaaatatgaggggattcata |
37715933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 6234450 - 6234236
Alignment:
| Q |
112 |
tctaagaaaaaagttatgaattac-----acttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagtt |
206 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||| ||||| |||||| | |||||| ||||||||||||||| |||||| ||| |
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| T |
6234450 |
tctaagaaaaaagttatgaattactgtacacttttctttcagaagggtaattaatgaatgaa--ttactagaaagtaatatgtatatggcatttgccgtt |
6234353 |
T |
|
| Q |
207 |
aactgatg--atcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcct--atggttctatctttgagttaggtggtgc |
302 |
Q |
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|| |||| || |||||||||||||||||||| || | |||||| |||||| ||| | |||| |||||| ||||||||||| ||||||||| |
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| T |
6234352 |
aattgatttaattaattaataataagcaaagtc---aacatatgttactgcacc------gcttgatcctttatggttttatctttgagtcaggtggtgc |
6234262 |
T |
|
| Q |
303 |
agatctcaaatatgaggggattcata |
328 |
Q |
| |
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||||||||||||||||||| |||||| |
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| T |
6234261 |
agatctcaaatatgaggggtttcata |
6234236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 37715609 - 37715650
Alignment:
| Q |
4 |
ccatattaagtgacatagttgagtctgtcgtacataccaatg |
45 |
Q |
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| T |
37715609 |
ccatattaagtgacacagttgattctgtcgtacataccaatg |
37715650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 46763535 - 46763331
Alignment:
| Q |
112 |
tctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagttaactg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||| |||||||||||||||| |||||| |||||||| |
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| T |
46763535 |
tctaagaaaaaagttatgaattacacttttcttttagaagggtaactaatgaatgaa--ttactagaaagtaatatgtatatagcatttgcagttaacta |
46763438 |
T |
|
| Q |
212 |
atgatcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcct--atggttctatctttgagttaggtggtgcagatctc |
309 |
Q |
| |
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|| | ||||||||||| ||||||| |||| |||||| |||||| ||| |||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
46763437 |
atta---attaataataaacaaagtc---aaaatatgttactgcacc------gcttggtcctttatggttttatctttgagtcaggtggtgcagatctc |
46763350 |
T |
|
| Q |
310 |
aaatatgaggggattcata |
328 |
Q |
| |
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||||||||||||||||||| |
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| T |
46763349 |
aaatatgaggggattcata |
46763331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 35764378 - 35764170
Alignment:
| Q |
112 |
tctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagttaactg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||| |||||||||||||||| |||||| |||||||| |
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| T |
35764378 |
tctaagaaaaaagttatgaattacacttttcttttagaag-gtaattaatgaat--gaattactagaaagtaatatgtatatagcatttgccgttaactg |
35764282 |
T |
|
| Q |
212 |
a--tgatcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcc--tatggttctatctttgagttaggtggtgcagatc |
307 |
Q |
| |
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| | || |||||||||||| |||| ||||||| |||||| | ||| || | ||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
35764281 |
atttaattaattaataataaacaaa---gtcaaaatatgtta------ctgcatcgtttggtcctttatggttttatctttgagtcaggtggtgcagatc |
35764191 |
T |
|
| Q |
308 |
tcaaatatgaggggattcata |
328 |
Q |
| |
|
||||||||||| |||||||| |
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| T |
35764190 |
tcaaatatgagaagattcata |
35764170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 43590493 - 43590289
Alignment:
| Q |
112 |
tctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagttaactg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||||||||||||| ||||||| |
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| T |
43590493 |
tctaagaaaaaagttatgaattacacttttcttttagaagggtaactaatgaatgaa--ttactagaaagtaatatgtatataacatttgccgttaacta |
43590396 |
T |
|
| Q |
212 |
atgatcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcct--atggttctatctttgagttaggtggtgcagatctc |
309 |
Q |
| |
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|| | ||||||||||| ||||||| |||| |||||| |||| | | | |||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
43590395 |
atta---attaataataaacaaagtc---aaaatatgttactgcaac------gattggtcctttatggttttatctttgagtcaggtggtgcagatctc |
43590308 |
T |
|
| Q |
310 |
aaatatgaggggattcata |
328 |
Q |
| |
|
||||||||||||||||||| |
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| T |
43590307 |
aaatatgaggggattcata |
43590289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 8266279 - 8266398
Alignment:
| Q |
118 |
aaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagttaactgatg--a |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| |||||| | ||||||| || ||||||||||||| ||||||||||||||| ||| | |
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| T |
8266279 |
aaaaaagttatgaattacacttctcttttagaagaataatgaatgaat--gaattactatgaactaatatgtatatagcatttgtagttaactaatgtaa |
8266376 |
T |
|
| Q |
216 |
tcaattaataataagcaaagtc |
237 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8266377 |
tcaattaataataagcaaagtc |
8266398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 21271370 - 21271166
Alignment:
| Q |
112 |
tctaagaaaaaagttatgaattacacttttcttttagaagagtaatggatgaattacatttactattaagtaatatgtatataacatttgtagttaactg |
211 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||| | |||||| |||||||||||||||| |||||| ||||||| |
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| T |
21271370 |
tctaacaaaaaagttatgaattacacttttcttttagaagggtaactaatgaatgaa--ttactagaaagtaatatgtatatagcatttgccgttaacta |
21271273 |
T |
|
| Q |
212 |
atgatcaattaataataagcaaagtcgtcaaaacatgttagtgcacccgcaccgctcggtcct--atggttctatctttgagttaggtggtgcagatctc |
309 |
Q |
| |
|
|| | ||||||||||| ||||||| |||| |||||| |||||| ||| |||||| |||||| ||||||||||| |||||||||| ||||| |
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|
| T |
21271272 |
atta---attaataataaacaaagtc---aaaatatgttactgcacc------gcttggtcctttatggttttatctttgagtcaggtggtgcaaatctc |
21271185 |
T |
|
| Q |
310 |
aaatatgaggggattcata |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21271184 |
aaatatgaggggattcata |
21271166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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