View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_55 (Length: 343)
Name: NF9001_low_55
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_55 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 8277982 - 8278316
Alignment:
| Q |
8 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
107 |
Q |
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| T |
8277982 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8278081 |
T |
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| Q |
108 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
207 |
Q |
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| T |
8278082 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatgcagttcattattttcaccatcaatgctaattattgtgt |
8278181 |
T |
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| Q |
208 |
cattatttgctgatgattcttgaggaaaaatagtaactgccttaccgttttgggtcaccgaaattgaatgcgtgatggtaggccttggttgttgcgtttg |
307 |
Q |
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| T |
8278182 |
cattatttgctgatgatt-ttgaggaaaaatagtaactgtcttaccgttttgggtcaccggaattgaatgcgtgatggtagggcttggttattgcgtttg |
8278280 |
T |
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| Q |
308 |
gatatactcctcatggtggctgactgcagctggctt |
343 |
Q |
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| T |
8278281 |
gatatgctcctcatggtggttgactgcggctggctt |
8278316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 8306791 - 8307125
Alignment:
| Q |
8 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
107 |
Q |
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| T |
8306791 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8306890 |
T |
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| Q |
108 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
207 |
Q |
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| T |
8306891 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatacagttcattattttcaccatcaatgctaattattgtgt |
8306990 |
T |
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| Q |
208 |
cattatttgctgatgattcttgaggaaaaatagtaactgccttaccgttttgggtcaccgaaattgaatgcgtgatggtaggccttggttgttgcgtttg |
307 |
Q |
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| T |
8306991 |
cattatttgctgatgatt-ttgaggaaaaatagtaactgtcttaccgttttgggtcaccggaattgaatgcgtgatggtagggcttggttattgcgtttg |
8307089 |
T |
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| Q |
308 |
gatatactcctcatggtggctgactgcagctggctt |
343 |
Q |
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| T |
8307090 |
gatatgctcctcatggtggttgactgcggctggctt |
8307125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 7811374 - 7811252
Alignment:
| Q |
136 |
tcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgtcattatttgctgatgattcttgaggaaa |
235 |
Q |
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| T |
7811374 |
tcttttttctagtaacaagcaaccaatcaccatgcagctcattatttccctcatcattgctaattattttgtcattatgtgctgatgatttattaggaaa |
7811275 |
T |
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| Q |
236 |
aatagtaactgccttaccgtttt |
258 |
Q |
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| T |
7811274 |
aatagaaactgccttaccgtttt |
7811252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 1027400 - 1027337
Alignment:
| Q |
280 |
tgatggtaggccttggttgttgcgtttggatatactcctcatggtggctgactgcagctggctt |
343 |
Q |
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| T |
1027400 |
tgatggtaggccttggttgttgcgtttggatatactcctcatggtggttgactgcggctggctt |
1027337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 35137803 - 35137923
Alignment:
| Q |
136 |
tcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgtcattatttgctgatgattcttgaggaaa |
235 |
Q |
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| T |
35137803 |
tcttttttcttgtaacaagaagccaatcaccatgaaggtcttgatgttctccatcattactaattattgtgccattattggctaatgattgttgagaaga |
35137902 |
T |
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| Q |
236 |
aatagtaactgccttaccgtt |
256 |
Q |
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| T |
35137903 |
aaaagaaactgccgtaccgtt |
35137923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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