View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_58 (Length: 340)
Name: NF9001_low_58
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 52808875 - 52808556
Alignment:
| Q |
9 |
tacaatttgggacggatagagtagaagtttaggttagttaagcttcaaaactcgtcaggattaaggcagacctccaagttcaacgagcattaatagaagt |
108 |
Q |
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| T |
52808875 |
tacaatttgggacggagagagtagaagtttaggttagttaagcttcaaaactcgtcaggattaaggcagacctccaagttcaacgagcattaataaaagt |
52808776 |
T |
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| Q |
109 |
attagctgaataaacttcttaccaactaagtcaaacttcagtctctaagaatgaaagttgttggtcccctgattaagttccaattttcattttagtctca |
208 |
Q |
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| T |
52808775 |
attagctgaataaacttcttaccaactaagtcaaacttcagtagctaagaatgaaagttgttggtcccctgattaagttccaattttcgttttagtctca |
52808676 |
T |
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| Q |
209 |
taactcgtaaaatcgacattttgcgatgtagttttgtcaaaataaaattaaggctaattataagtagatcactaaaagttcacaattaaactcgctaaac |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52808675 |
taacttgtaaaatcgacattttgcgatgtagttttgtcaaaataaaattaaggctaattataagtagatcact-aaagttcacaattaaactcgctaaac |
52808577 |
T |
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| Q |
309 |
aagttaattttctgatgtcca |
329 |
Q |
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|||||||||||||| |||||| |
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| T |
52808576 |
aagttaattttctggtgtcca |
52808556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 26631300 - 26631260
Alignment:
| Q |
191 |
attttcattttagtctcataactcgtaaaatcgacattttg |
231 |
Q |
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| T |
26631300 |
attttcattttggtctcataactcgtaaaatcaacattttg |
26631260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 9482471 - 9482532
Alignment:
| Q |
170 |
tggtcccctgattaagttccaattttcattttagtctcataactcgtaaaatcgacattttg |
231 |
Q |
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| T |
9482471 |
tggtcccctaattaatttccagtttttattttagtcacatatctcgtaaaatcaacattttg |
9482532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 37415030 - 37415070
Alignment:
| Q |
191 |
attttcattttagtctcataactcgtaaaatcgacattttg |
231 |
Q |
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| T |
37415030 |
attttcattttggtctcataactcgtaaaatcaacattttg |
37415070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 43202132 - 43202171
Alignment:
| Q |
192 |
ttttcattttagtctcataactcgtaaaatcgacattttg |
231 |
Q |
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|||||||||||||| |||||||||||||||| |||||||| |
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| T |
43202132 |
ttttcattttagtcccataactcgtaaaatcaacattttg |
43202171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 1310748 - 1310709
Alignment:
| Q |
192 |
ttttcattttagtctcataactcgtaaaatcgacattttg |
231 |
Q |
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||||||||||| ||||||||||||||||||| |||||||| |
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| T |
1310748 |
ttttcattttaatctcataactcgtaaaatcaacattttg |
1310709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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