View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_66 (Length: 317)
Name: NF9001_low_66
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 27895554 - 27895255
Alignment:
| Q |
1 |
caagcaagtgagtgtaactattcactccttgtcctataaaatgtttggtttcctcggttgttgtgatcctannnnnnncgccctctttggtgtgtgtatc |
100 |
Q |
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| T |
27895554 |
caagcaagtgagtgtaactattcactccttgtcctataaaatgtttggtttcctcggttgttgtgatcctatttttttcgccctctttggtgtgtgtatc |
27895455 |
T |
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| Q |
101 |
aacacaatgatggcttcctgctgaacattcttcttattgcaggatcttcctgaagcagtatcatctgaagaactagctcggtatctagatttaaagaagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27895454 |
aacacaatgatggcttcctgctgaacattcttcttattgcaggatctccctgaagcagtatcatctgaagaactagctcggtatctagatttaaagaagc |
27895355 |
T |
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| Q |
201 |
tggacgaaagagtctacatgtttgaagccgtgtcatcatatgatgggtaagtgagaggttgtataaactttttaaatcttaagggggcacagacccttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27895354 |
tggacgaaagagtctacatgtttgaagccgtgtcatcatatgatgggtaagtgagaggttgtataaactttttaaatcttaagggggcacagacccttga |
27895255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 7628172 - 7627895
Alignment:
| Q |
1 |
caagcaagtgagtgtaactattcactccttgtcctataaaatgtttggtttcctcggttgttgtgatcctannnnnnn-cgccctctttggtgtgtgtat |
99 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
7628172 |
caagcaagtgagtataactattcactccctgtcctataaaatgtttggtttcctcttttgttgtgatcctattttttttcgccctctttggtgtgtgtat |
7628073 |
T |
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| Q |
100 |
caacacaatgatggcttcctgctgaacattcttcttattgcaggatcttcctgaagcagtatcatctgaagaactagctcggtatctagatttaaagaag |
199 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7628072 |
cag-----tgatggctgcatgctgaacattcttcttattgcaggatcttcctgaagcagtatcatctgaagaactagctcggtatctagatttaaagaag |
7627978 |
T |
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| Q |
200 |
ctggacgaaagagtctacatgtttgaagccgtgtcatcatatgatgggtaagtgagaggttgtataaactttttaaatcttaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
7627977 |
ctggacgaaagagtctacatgtttgaagccgtgtcagcatatgatgggtaagtgagaggttatataaacttttcaaatcttaa |
7627895 |
T |
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