View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_67 (Length: 304)
Name: NF9001_low_67
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 49399265 - 49399114
Alignment:
| Q |
18 |
ttggttttgattttgattttaactactgaaattagtttgttgaaattgaattcaattcctcatgccgatacaacaattgaataactttgttatatataat |
117 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49399265 |
ttggttttgattttgattttaactattggaattagtttgttaaaattgaattcaattcctcatgccaatacaacaattgaataactttgttatatataat |
49399166 |
T |
|
| Q |
118 |
gaggtgtataaattgttatgcaacaaatgaatgtcaaacaaaattggataaa |
169 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
49399165 |
gaggtgtataaattgttatgcagcaaatgaatgttaaacaaaattggataaa |
49399114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 49398940 - 49398822
Alignment:
| Q |
181 |
actgtcaccgccccctgtcaatatcgtcctc------------cgccaacatcgtcgaagagaggtaaggttgaggacgagatagagaaagaagaaccat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49398940 |
actgtcaccgccccctgtcaatatcgtcctctgccttcaccaccgccaacatcgtcaaagagaggtaaggttgtggacgagatagagaaagaagaaccat |
49398841 |
T |
|
| Q |
269 |
gaagcaagcacaaaatttt |
287 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
49398840 |
gaagcaagcataaaatttt |
49398822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 44896377 - 44896503
Alignment:
| Q |
1 |
cattatcctccaatttgttggttttgattttgattttaactactgaaattagtttgttgaaattgaattcaattcctcatgccgatacaacaattgaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
44896377 |
cattatcctccaatttgttggttttgattttgattttaactactggaattagtttgttgaaattgaattcaattcttcatgccaatacaacaattgaata |
44896476 |
T |
|
| Q |
101 |
actttgttatatataatgaggtgtata |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44896477 |
actttgttatatataatgaggtgtata |
44896503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 287
Target Start/End: Original strand, 44908835 - 44909005
Alignment:
| Q |
129 |
attgttatgcaacaaatgaatgtcaaacaaaattggataaacagataatattactgtcaccgccccctgtcaatatcgtcctccgc------------ca |
216 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
44908835 |
attgttatgcagcaaatgaatgttaaacaaaattggataaacagataatattactgtcaccgccccttgtcaatattgtcctccgccttcaccaccgcca |
44908934 |
T |
|
| Q |
217 |
acatcgtcgaagagaggtaaggttgaggacgagatagagaaagaagaaccatgaagcaagcacaaaatttt |
287 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44908935 |
acatcgtcaaagagaggtaaggttgaggacgagatagagaaagaagaaccatgaagcaagcacaaaatttt |
44909005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University