View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_70 (Length: 304)
Name: NF9001_low_70
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 25655673 - 25655961
Alignment:
| Q |
1 |
gatgaagatcatttgttttgtataagtagtttttccagaaaggtttagtattcgattttcaagtggattggaatgagagcggttttatccgggatatggt |
100 |
Q |
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| T |
25655673 |
gatgaagatcatttgttttgtaaaagtagttttgtcagaaaggtttagtattcaattttcaagtggattggaatgagagcgattttatctgggatatggt |
25655772 |
T |
|
| Q |
101 |
ctctcttctagactatttttcatcatcctctttgaattaaaaacatcggaaatgactaattctaatttggcacacaacaatttggaagatttgagaagtt |
200 |
Q |
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| T |
25655773 |
ctctcttctagactatttttcatcatcctctttgaataaaaaacaccggaaatgattaattctaatctggcacacaacaatttggaagatttgagaagtt |
25655872 |
T |
|
| Q |
201 |
aggaatgagataattttctcctcatcatctccggatgtcgaagattatattgtggataggattaaaacaacctcttgcatgtgggtttt |
289 |
Q |
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| T |
25655873 |
agaaatgagataattttctcctcataatctccggatgtcgaagattatattgtggataggattaaaacaacctcttgcatgtgggtttt |
25655961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 2017124 - 2017338
Alignment:
| Q |
1 |
gatgaagatcatttgttttgtataagtagtttttccagaaaggtttagtattcgattttcaagtggattggaatgagagcggttttatccggg-atatgg |
99 |
Q |
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| T |
2017124 |
gatgacgataatttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacatgagtgattttactcgggcatgtgg |
2017223 |
T |
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| Q |
100 |
tctctcttctagactatttttcatcatcctctttgaattaaaaacatcg-gaaatgactaattctaatttggcacacaacaatttggaagatttgagaag |
198 |
Q |
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| T |
2017224 |
tttctctactagactatttctcatcatcctctttgaattaaaaaaacccagaaaggattaattctaagttggcacacaaaattttggaagatttgagaag |
2017323 |
T |
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| Q |
199 |
ttaggaatgagataa |
213 |
Q |
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|||||||| ||||| |
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| T |
2017324 |
ctaggaatgtgataa |
2017338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 12776705 - 12776672
Alignment:
| Q |
42 |
ggtttagtattcgattttcaagtggattggaatg |
75 |
Q |
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| T |
12776705 |
ggtttagtattcgattttcaagtggataggaatg |
12776672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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