View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9001_low_72 (Length: 301)

Name: NF9001_low_72
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9001_low_72
NF9001_low_72
[»] chr5 (2 HSPs)
chr5 (1-285)||(31474669-31474953)
chr5 (1-285)||(40842229-40842513)
[»] chr4 (1 HSPs)
chr4 (95-208)||(6036627-6036739)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31474953 - 31474669
Alignment:
Q  1 ttcaaaatgctcgcaatctttgagacattgcattatttgatatcgaaattcaacctgggtcctgattcttcggtgaaggaagctgcagttagagtccaaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31474953 ttcaaaatgctcgcaatctttgagacattgcatcatttgatatcgaaattcaacttgggtcctgattcttcggtgaaggaagctgcagttagagtccaaa 31474854  T
Q  101 acagattaggagaagcaatcagggaccttttcttgaaactaaattatctgactttccgtgtcccagcagcaaagaaagttgctcggtctgatggtcgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31474853 acagattaggagaagcaatcagggaccttttcttgaaactaaattatctgactttccgtgtcccagcagcaaagaaagttgctcggtctgatggacgaca 31474754  T
Q  201 tcatccaatggcagtccagatcattagctacgtcacttctgcttgtagttcacgccacacgctagaacaagttttgcaggaatat 285  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31474753 tcatccaatggcagtccagatcattagctacgtcgcttctgcttgtaggtcacgccacacgctagaacaagttttgcaggaatat 31474669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 40842513 - 40842229
Alignment:
Q  1 ttcaaaatgctcgcaatctttgagacattgcattatttgatatcgaaattcaacctgggtcctgattcttcggtgaaggaagctgcagttagagtccaaa 100  Q
    ||||||||||| |||||||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  40842513 ttcaaaatgcttgcaatctttgagactttgcatcatctgatatcgaaattccacttgggtcctgattcttcggtgaaggaagctgcagttacagtccaaa 40842414  T
Q  101 acagattaggagaagcaatcagggaccttttcttgaaactaaattatctgactttccgtgtcccagcagcaaagaaagttgctcggtctgatggtcgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  40842413 acagattaggagaagcaatcagggaccttttcttgaaactaaattatctgaccttccgtgtcccagcagcaaagaaagtttctcggtctgatggtcgaca 40842314  T
Q  201 tcatccaatggcagtccagatcattagctacgtcacttctgcttgtagttcacgccacacgctagaacaagttttgcaggaatat 285  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  40842313 tcatccaacggcagtccagatcattagctacgtcacttctgcttgtaggtcacgccacacgctcgaacaagttttgcaggaatat 40842229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 6036739 - 6036627
Alignment:
Q  95 tccaaaacagattaggagaagcaatcagggaccttttcttgaaactaaattatctgactttccgtgtcccagcagcaaagaaagttgctcggtctgatgg 194  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||  ||||| |||||||||||||| ||  ||| || ||  ||||||||    
T  6036739 tccaaatcaggttaggagaagcaatcagtgaccttttcttgaaactgaattatccaacttttcgtgtcccagcagctaaacaagatgttccatctgatgg 6036640  T
Q  195 tcgacatcatccaa 208  Q
     |||||||||||||    
T  6036639 -cgacatcatccaa 6036627  T

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