View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_75 (Length: 300)
Name: NF9001_low_75
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 3924862 - 3924583
Alignment:
| Q |
12 |
ctatggtgttgatgagggtgaaggaagaggtaactacaaaatggggaatgatgatcctaatttatacaaatctgaaaagtttgggcctccaatagattgt |
111 |
Q |
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| T |
3924862 |
ctatagtgttgatgagggtgaaggaagaggtaacaacaaaatggggaatgatgatcctaatttatacaaatctgaaaagtttgggcctacaatagattgt |
3924763 |
T |
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| Q |
112 |
gcgattttgctttacaagtgcttggcttcccctataccttttctgcctaatcctgcgtgccttctctataatcagttttgtgctcaaaaacctccaactc |
211 |
Q |
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| T |
3924762 |
gcgattttgctttacaattgcttggcttcccctataccttttgtgcctaatcctgcgtgccttctctataatcagttttgtgctcaaaaacctccaactc |
3924663 |
T |
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| Q |
212 |
caagtactcttccatgatgagtgatcgtggccatggtctttgtgtgttatattgatatctatatatctacctatactaat |
291 |
Q |
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| T |
3924662 |
caagtactcttccatgatgagtgatcgtggccatggtctttgtgtgttattttgatatctatatatctacctatactaat |
3924583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 3930963 - 3930846
Alignment:
| Q |
176 |
tctataatcagttttgtgctcaaaaacctccaactccaagtactcttccatgatgagtgatcgtggccatg--gtctttgtgtgttatattgatatctat |
273 |
Q |
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| T |
3930963 |
tctatattaagttgtgtgctcaaaaacctccaagtccaagtactattccatgatgaatgattttggccatgtcctctgtgtgtgttatattgatatctat |
3930864 |
T |
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| Q |
274 |
atatctacctatactaat |
291 |
Q |
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|||| || |||||||||| |
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| T |
3930863 |
atatttatctatactaat |
3930846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 269
Target Start/End: Original strand, 4054359 - 4054449
Alignment:
| Q |
173 |
ttctctataatcagttttgtgctcaaaaacctccaactccaagtactcttccatgatgagtgatcgtggccatggtctttgtgtgttatattgatat |
269 |
Q |
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| T |
4054359 |
ttctctataatcagatttgtgctcaaaaacctcc------aagtactcttccatgataagtaatcgtggccatgctctttgtgtgttatattgatat |
4054449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 4054055 - 4054121
Alignment:
| Q |
12 |
ctatggtgttgatgagggtgaaggaagaggtaactacaaaatggggaatgatgatcctaatttatac |
78 |
Q |
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| T |
4054055 |
ctatagtgttgatgagggtgaaggaagaggtaactacaaactgaggaaagataatcctaatttatac |
4054121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 3931077 - 3931020
Alignment:
| Q |
17 |
gtgttgatgagggtgaaggaagaggtaactacaaaatggggaatgatgatcctaattt |
74 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3931077 |
gtgttggtgagggtgaaggaagaggtaactacaaactggagaatgatgatcctaattt |
3931020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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