View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_76 (Length: 297)
Name: NF9001_low_76
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 23257566 - 23257720
Alignment:
| Q |
40 |
aacaatgattattagagaatatgaaagatgaattttctggaaatttcaaaaaccccaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257566 |
aacaatgattattagagaatatgaaagatgaattttctgaaaatttcaaaaaccccaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagt |
23257665 |
T |
|
| Q |
140 |
atgaaccaccatcattcaacattgcaatctattttgaaggaaccatatctcttcc |
194 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
23257666 |
atgaaccaccatcattcaatattgcaatctattttgaaggaaccatatcttttcc |
23257720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 14527178 - 14527332
Alignment:
| Q |
40 |
aacaatgattattagagaatatgaaagatgaattttctggaaatttcaaaaaccccaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
14527178 |
aacaatgattattagagaatatgaaagatgaattttctggaaatttcaaaaactccaaatgtttgatttcatgttcctgtgttaaattcaagttcaaagt |
14527277 |
T |
|
| Q |
140 |
atgaaccaccatcattcaacattgcaatctattttgaaggaaccatatctcttcc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14527278 |
atgaaccaccatcattcaacattgcaatccattttgaaggaaccatatctcttcc |
14527332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 51386715 - 51386870
Alignment:
| Q |
40 |
aacaatgattattagagaatatgaaagatgaattttctggaaatttcaaaaaccccaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51386715 |
aacaatgattattagagaatatgaaagatgaattttctggaaatttcaaaaacctcaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagt |
51386814 |
T |
|
| Q |
140 |
atgaaccaccatcattcaacattgcaatctattttgaaggaaccatatctcttcccat |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51386815 |
atgaaccacc--cattcaacattgcaatctattttgaagtaaccatatctcttcccat |
51386870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 51386636 - 51386666
Alignment:
| Q |
17 |
cgtaaaacactatattgcacaagaacaatga |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51386636 |
cgtaaaacactatattgcacaagaacaatga |
51386666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 26847322 - 26847473
Alignment:
| Q |
43 |
aatgattattagagaatatgaaagatgaattttctggaaatttcaaaaaccccaaatgtttgatttcatgttcccgtgttaaattcaagtttaaagtatg |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26847322 |
aatgattattagagaatatgaa-gatgaattttctggaaatttcaaaaaccccaaatgtttgatttcatgttcccatgttaaattcaagtttaaagtatg |
26847420 |
T |
|
| Q |
143 |
aaccaccatcattcaacattgcaatctattttgaaggaaccatatctcttccca |
196 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
26847421 |
aa-caccatcattcaacattgcaatctattttgatggaaccacatctcttccca |
26847473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University