View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_83 (Length: 274)
Name: NF9001_low_83
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42551948 - 42551693
Alignment:
| Q |
1 |
atcaacagtagcaattgaaacaagagtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtctta |
100 |
Q |
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| T |
42551948 |
atcaacagtagcaattgaaacaagagtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtctta |
42551849 |
T |
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| Q |
101 |
aacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctct |
200 |
Q |
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| T |
42551848 |
aacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctct |
42551749 |
T |
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| Q |
201 |
tcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaacc |
256 |
Q |
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| T |
42551748 |
tcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaacc |
42551693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 1239876 - 1240005
Alignment:
| Q |
92 |
atagtcttaaacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctat |
191 |
Q |
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| T |
1239876 |
atagttttaaacaaaactggagcataaaatgtgatgacattcatgccagtgagttgctggaataatggaatagctatggccatggtaagttgaggcctat |
1239975 |
T |
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| Q |
192 |
attgtctcttcaacaaagagacccaagggt |
221 |
Q |
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| T |
1239976 |
actgcctcgtcaacaaacaagcccaagggt |
1240005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 42518198 - 42518314
Alignment:
| Q |
92 |
atagtcttaaacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctat |
191 |
Q |
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||||| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| | ||||| || || ||||| |||| |
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| T |
42518198 |
atagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagtgagttgctggaagaatggaatagctgtggccatggtaagctgaggcctat |
42518297 |
T |
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| Q |
192 |
attgtctcttcaacaaa |
208 |
Q |
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| T |
42518298 |
actgcctcgtcaacaaa |
42518314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 18234261 - 18234516
Alignment:
| Q |
1 |
atcaacagtagcaattgaaacaagagtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtctta |
100 |
Q |
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||||||||| || ||||| || | |||||| ||||| ||||| ||||| |||| | |||||||| ||||||||| || | ||||| ||||||||||| |
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| T |
18234261 |
atcaacagtggcgattgatacgaaagtggcaagtgcgttacatcctccggtaatcagggctgacatgagagaagcgttgctgctaaacccaatagtcttg |
18234360 |
T |
|
| Q |
101 |
aacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctct |
200 |
Q |
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||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
18234361 |
aacaaaacaggagcatagaatgtaatcacattcatgccggtgagttgctgaaagaacggaatggctattgccattgtgagatgaggtctatacggtctcg |
18234460 |
T |
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| Q |
201 |
tcaacaaagagacccaagggtgtttcacagtttttgaaacatcactagctacaacc |
256 |
Q |
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||||||||||| ||||||| |||| |||||||||||||| |||||||||| ||||| |
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| T |
18234461 |
tcaacaaagaggcccaaggatgttccacagtttttgaaatatcactagctgcaacc |
18234516 |
T |
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