View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9001_low_88 (Length: 242)
Name: NF9001_low_88
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_88 |
 | |
|
| [»] scaffold1148 (1 HSPs) |
| | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30504911 - 30504681
Alignment:
| Q |
1 |
tttcaacaacttactaacatctcggacattcgagtatctcacaaaaccgtaccgttccccgttaacattgcacctacggggtaccacaacctcgtccagc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30504911 |
tttcaacaacttactaacatcccggacattcgagtatctcacaaaaccgtaccgttctccgttaacattgcacctacggggtaccacaacctcgtccagc |
30504812 |
T |
|
| Q |
101 |
atgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaaccgtcgaaaaagagacgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
30504811 |
atgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacataccgtcgaaaaagagccgcat |
30504712 |
T |
|
| Q |
201 |
tcgtcaaggccttggtggctccgctgatgtc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30504711 |
tcgtcaaggccttggtggctccgctgatgtc |
30504681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30545254 - 30545024
Alignment:
| Q |
1 |
tttcaacaacttactaacatctcggacattcgagtatctcacaaaaccgtaccgttccccgttaacattgcacctacggggtaccacaacctcgtccagc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545254 |
tttcaacaacttactaacatcccggacattcgagtatctcacaaaaccgtaccgttctccgttaacattgcacctacggggtaccacaacctcgtccagc |
30545155 |
T |
|
| Q |
101 |
atgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaaccgtcgaaaaagagacgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
30545154 |
atgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacataccgtcgaaaaagagccgcat |
30545055 |
T |
|
| Q |
201 |
tcgtcaaggccttggtggctccgctgatgtc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30545054 |
tcgtcaaggccttggtggctccgctgatgtc |
30545024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 9872649 - 9872836
Alignment:
| Q |
1 |
tttcaacaacttactaacatctcggacattcgagtatctcacaaaaccgtaccgttccccgttaacattgcacctacggggtaccacaacctcgtccagc |
100 |
Q |
| |
|
||||||||| ||||||||||| || ||||| || | ||||||||||| || | ||||| |||||||| | ||||| || || || ||||| |||||| |
|
|
| T |
9872649 |
tttcaacaatttactaacatcacgaacattagaacacctcacaaaaccatagagctccccattaacattacgcctactaggaacaaccacctcttccagc |
9872748 |
T |
|
| Q |
101 |
atgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaaccgtcgaaa |
189 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||||||||||| ||| || | |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
9872749 |
ataccacatacctcaaaacctttctgtaaataaaaatttgat-agtttgagggaaaattggtaaaataaaaagttacaaaccgtcgaaa |
9872836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 15176547 - 15176482
Alignment:
| Q |
100 |
catgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaa |
165 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
15176547 |
catgccacaaacctctaaccctttctgtaaataaaaattcgataagtacgacggaaaattagtaaa |
15176482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 21554316 - 21554393
Alignment:
| Q |
104 |
ccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaac |
181 |
Q |
| |
|
|||||||| || |||||||| |||||||| || ||||||||| |||| ||||||||||||||||| || ||||||||| |
|
|
| T |
21554316 |
ccacaaacttctaaccctttccgtaaatagaagttcgataagtacggcggaaaattagtaaaatagaaagtgacaaac |
21554393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 28395220 - 28395143
Alignment:
| Q |
104 |
ccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaac |
181 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
28395220 |
ccacaaacttcaaaccctttccgtaaatagaagttcgataaaaacggcggaaagttagtaaaatagaaagtgacaaac |
28395143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 18772828 - 18772905
Alignment:
| Q |
104 |
ccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaac |
181 |
Q |
| |
|
|||||||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
18772828 |
ccacaaacttctaaccctttacgtaaatagaagttcgataaaaacggcggaaagttagtaaaatagaaagtgacaaac |
18772905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1148 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1148
Description:
Target: scaffold1148; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 422 - 321
Alignment:
| Q |
83 |
accacaacctcgtccagcatgccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaacc |
182 |
Q |
| |
|
||||| ||||| || || || ||||| |||||||| ||||| || ||||||||||| || || || |||||||| ||||||||||| |||||||||| |
|
|
| T |
422 |
accaccacctcctcgagtattccacatacctcaaatcctttacgcaaataaaaatttgacaattgaggcggaaaattggtaaaataaaatgtgacaaacc |
323 |
T |
|
| Q |
183 |
gt |
184 |
Q |
| |
|
|| |
|
|
| T |
322 |
gt |
321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 8897 - 8962
Alignment:
| Q |
116 |
aacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaac |
181 |
Q |
| |
|
||||||||||||||| | || || |||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
8897 |
aacccttttcgtaaacagaagtttgataagtacgacggaaaattagtaaaatagaaagtgacaaac |
8962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 9140631 - 9140707
Alignment:
| Q |
104 |
ccacaaacctcaaacccttttcgtaaataaaaattcgataagaacggtggaaaattagtaaaataaaacgtgacaaa |
180 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||| ||||| || || |||||||| |||||||| ||||| ||||| |
|
|
| T |
9140631 |
ccacagacctcaaaccctttacgcagagaaaaattggataaaaaaggcggaaaattggtaaaatagaacgtaacaaa |
9140707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University