View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9001_low_89 (Length: 238)

Name: NF9001_low_89
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9001_low_89
NF9001_low_89
[»] chr5 (21 HSPs)
chr5 (8-238)||(18606950-18607180)
chr5 (38-77)||(16434396-16434435)
chr5 (38-89)||(37472599-37472650)
chr5 (31-78)||(41600897-41600944)
chr5 (37-98)||(18288044-18288105)
chr5 (40-89)||(31264446-31264495)
chr5 (38-94)||(5467975-5468031)
chr5 (38-78)||(40211962-40212002)
chr5 (38-77)||(11596469-11596508)
chr5 (38-85)||(19737488-19737535)
chr5 (39-94)||(43554528-43554583)
chr5 (27-89)||(7997168-7997230)
chr5 (40-74)||(22423829-22423863)
chr5 (46-88)||(26205763-26205805)
chr5 (33-94)||(25863205-25863266)
chr5 (38-83)||(28296334-28296379)
chr5 (40-85)||(28588680-28588725)
chr5 (40-85)||(30098334-30098379)
chr5 (41-94)||(39695996-39696049)
chr5 (38-82)||(21577117-21577161)
chr5 (38-78)||(43208287-43208327)
[»] chr3 (21 HSPs)
chr3 (33-109)||(52369776-52369852)
chr3 (31-94)||(12704654-12704717)
chr3 (39-91)||(3730165-3730217)
chr3 (27-85)||(13807164-13807222)
chr3 (27-97)||(25652025-25652095)
chr3 (33-94)||(7931595-7931656)
chr3 (46-78)||(12987752-12987784)
chr3 (31-95)||(21211287-21211351)
chr3 (38-85)||(20691325-20691372)
chr3 (34-89)||(25365464-25365519)
chr3 (39-94)||(25892467-25892522)
chr3 (38-85)||(40150577-40150624)
chr3 (40-86)||(1830351-1830397)
chr3 (27-89)||(15864828-15864890)
chr3 (27-89)||(24205043-24205105)
chr3 (35-85)||(33006826-33006876)
chr3 (38-88)||(34189433-34189483)
chr3 (38-84)||(37077364-37077410)
chr3 (38-86)||(21149073-21149121)
chr3 (38-94)||(25074795-25074851)
chr3 (42-94)||(51512180-51512232)
[»] chr6 (24 HSPs)
chr6 (19-87)||(6299499-6299567)
chr6 (19-87)||(6306309-6306377)
chr6 (37-94)||(34446570-34446627)
chr6 (27-95)||(6389738-6389806)
chr6 (37-89)||(12086347-12086399)
chr6 (37-89)||(12235521-12235573)
chr6 (38-89)||(13689195-13689246)
chr6 (39-74)||(15443702-15443737)
chr6 (33-77)||(13211295-13211339)
chr6 (39-71)||(33141265-33141297)
chr6 (27-94)||(17168460-17168527)
chr6 (42-84)||(9024183-9024225)
chr6 (39-77)||(29049892-29049930)
chr6 (31-73)||(29711261-29711303)
chr6 (40-94)||(30781291-30781345)
chr6 (38-83)||(7569176-7569221)
chr6 (44-85)||(8931608-8931649)
chr6 (40-85)||(9617442-9617487)
chr6 (37-94)||(26247431-26247488)
chr6 (40-85)||(30866150-30866195)
chr6 (33-126)||(34229455-34229548)
chr6 (33-69)||(2140503-2140539)
chr6 (41-85)||(9629392-9629436)
chr6 (38-94)||(19602178-19602234)
[»] chr4 (24 HSPs)
chr4 (33-88)||(19230312-19230367)
chr4 (39-109)||(31243530-31243600)
chr4 (27-94)||(20743275-20743342)
chr4 (27-94)||(24343502-24343569)
chr4 (27-89)||(12084215-12084277)
chr4 (38-85)||(14465300-14465347)
chr4 (38-84)||(18513248-18513294)
chr4 (38-83)||(5654599-5654644)
chr4 (37-78)||(43299984-43300025)
chr4 (37-78)||(43300621-43300662)
chr4 (30-74)||(5176982-5177026)
chr4 (38-78)||(10546154-10546194)
chr4 (31-94)||(8820407-8820470)
chr4 (39-74)||(23915136-23915171)
chr4 (39-85)||(25390892-25390938)
chr4 (41-83)||(46180944-46180986)
chr4 (37-94)||(3144649-3144706)
chr4 (39-84)||(6285061-6285106)
chr4 (40-85)||(33950144-33950189)
chr4 (38-94)||(34589705-34589759)
chr4 (41-74)||(44796979-44797012)
chr4 (33-77)||(2976695-2976739)
chr4 (41-85)||(11110212-11110256)
chr4 (37-89)||(16402213-16402265)
[»] chr1 (21 HSPs)
chr1 (31-94)||(6936397-6936460)
chr1 (37-88)||(11634127-11634178)
chr1 (37-84)||(40747780-40747827)
chr1 (38-72)||(48785283-48785317)
chr1 (37-94)||(42004944-42005001)
chr1 (39-95)||(39101178-39101234)
chr1 (42-85)||(2445880-2445923)
chr1 (38-85)||(11412774-11412821)
chr1 (32-75)||(11571585-11571628)
chr1 (38-85)||(24176373-24176420)
chr1 (40-78)||(609471-609509)
chr1 (40-74)||(1262892-1262926)
chr1 (39-77)||(3921674-3921712)
chr1 (31-89)||(22794080-22794138)
chr1 (38-76)||(43609833-43609871)
chr1 (39-76)||(17080896-17080933)
chr1 (31-68)||(24806944-24806981)
chr1 (40-85)||(36878469-36878514)
chr1 (39-76)||(43942331-43942368)
chr1 (27-83)||(6427345-6427401)
chr1 (40-84)||(30847727-30847771)
[»] chr8 (22 HSPs)
chr8 (38-83)||(3508058-3508103)
chr8 (40-84)||(8798838-8798882)
chr8 (39-78)||(37225756-37225795)
chr8 (39-94)||(40063958-40064013)
chr8 (37-82)||(30068037-30068082)
chr8 (37-109)||(13009475-13009547)
chr8 (39-107)||(13845241-13845309)
chr8 (33-85)||(33697147-33697199)
chr8 (37-89)||(35431142-35431194)
chr8 (37-88)||(3658152-3658203)
chr8 (33-88)||(9936815-9936870)
chr8 (39-78)||(12985399-12985438)
chr8 (39-90)||(28883879-28883930)
chr8 (27-94)||(44067511-44067578)
chr8 (39-69)||(14227229-14227259)
chr8 (40-78)||(29198492-29198530)
chr8 (39-89)||(39820436-39820486)
chr8 (38-83)||(22770968-22771013)
chr8 (40-85)||(31236583-31236628)
chr8 (37-89)||(1676717-1676769)
chr8 (40-84)||(3025559-3025603)
chr8 (38-78)||(26466561-26466601)
[»] chr7 (18 HSPs)
chr7 (37-94)||(5938477-5938534)
chr7 (33-94)||(17780081-17780142)
chr7 (38-85)||(2525850-2525897)
chr7 (38-85)||(38134412-38134459)
chr7 (37-94)||(23930224-23930281)
chr7 (39-94)||(29812661-29812716)
chr7 (27-94)||(43249988-43250055)
chr7 (39-89)||(3801207-3801257)
chr7 (19-85)||(19206037-19206103)
chr7 (38-76)||(35238199-35238237)
chr7 (38-76)||(44172905-44172943)
chr7 (39-84)||(4909158-4909203)
chr7 (40-85)||(24146824-24146869)
chr7 (27-88)||(38804558-38804619)
chr7 (42-82)||(7133287-7133327)
chr7 (37-89)||(23751905-23751957)
chr7 (39-83)||(36314635-36314679)
chr7 (41-85)||(41229304-41229348)
[»] chr2 (20 HSPs)
chr2 (24-88)||(10535762-10535826)
chr2 (33-89)||(12748685-12748741)
chr2 (27-94)||(24011031-24011098)
chr2 (39-94)||(25544488-25544543)
chr2 (31-69)||(2073941-2073979)
chr2 (38-84)||(18570978-18571024)
chr2 (37-94)||(30563414-30563471)
chr2 (38-78)||(4690296-4690336)
chr2 (42-94)||(11308001-11308053)
chr2 (38-94)||(19573984-19574040)
chr2 (39-83)||(19613621-19613665)
chr2 (38-94)||(23354649-23354705)
chr2 (33-76)||(10250727-10250770)
chr2 (38-85)||(34006997-34007044)
chr2 (39-74)||(44605156-44605191)
chr2 (38-84)||(23406874-23406920)
chr2 (16-84)||(30394441-30394509)
chr2 (38-78)||(31026701-31026741)
chr2 (39-74)||(36611906-36611942)
chr2 (38-74)||(40681988-40682024)
[»] scaffold0011 (1 HSPs)
scaffold0011 (39-85)||(240027-240073)
[»] scaffold0598 (1 HSPs)
scaffold0598 (37-89)||(8055-8107)
[»] scaffold0007 (1 HSPs)
scaffold0007 (38-88)||(225271-225321)
[»] scaffold0022 (1 HSPs)
scaffold0022 (38-83)||(99899-99944)
[»] scaffold0199 (1 HSPs)
scaffold0199 (37-89)||(1954-2006)
[»] scaffold0037 (1 HSPs)
scaffold0037 (30-74)||(102903-102947)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 18607180 - 18606950
Alignment:
Q  8 atggacatcatacaccaatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacac 107  Q
    |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18607180 atggacatcagacaccgatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgacac 18607081  T
Q  108 cggaacacctctaatccgaggagtgtctgtattttatagtaataaattgagaaacttacatcaacgttgtatttctttgcaataccgtgccgatcaatgg 207  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  18607080 cggaacacctctagtccgaggagtgtctgtattttacagtaataaattgagaaacttacatcaacgttggttttctttgcaatactgtgccgatcaatgg 18606981  T
Q  208 ctgccataccagttctccactcaaaatcaat 238  Q
    |||||||||||||| ||||||||||||||||    
T  18606980 ctgccataccagttttccactcaaaatcaat 18606950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 16434435 - 16434396
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcat 77  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16434435 gataataatttgaaaaaataacataattcaatataatcat 16434396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 37472650 - 37472599
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||| |||||||| ||||||||| ||||||||||| ||||||||||    
T  37472650 gataataattcgagaaaatgacataattcgatataatcatatgtgtcgtgtc 37472599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 41600897 - 41600944
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  41600897 caacattgataataatttgagaaaattacacaattcaatataatcata 41600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 18288105 - 18288044
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggt 98  Q
    |||||||||||||||||||| || ||| ||| |||||||||||||||| ||||  |||||||    
T  18288105 ggataataatttgagaaaatgacttaactcagtataatcataggtgtcatgtcaatgttggt 18288044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 5468031 - 5467975
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||||| ||||| |||||||||| | |||| |||||||||||||| ||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcggtgt 5467975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 40211962 - 40212002
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  40211962 gataataaattgagaaaattacataattcaatataatcata 40212002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 11596508 - 11596469
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcat 77  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  11596508 gataataatttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 19737535 - 19737488
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||||||    
T  19737535 gataataatttgagaaaattacataattcaatgcaatcatatgtgtcg 19737488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 43554528 - 43554583
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||| | |||||| | | ||||||||||||||||||| ||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 43554583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 7997230 - 7997168
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||| |||||||||||||||||||| | ||||| || | |||| ||| ||||||||||    
T  7997230 acgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtc 7997168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 22423863 - 22423829
Alignment:
Q  40 taataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||| |||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataat 22423829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 26205805 - 26205763
Alignment:
Q  46 tttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 26205763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 25863205 - 25863266
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| |||||||||||||||||| | |||||||| | |||| ||| |||||||||| ||||    
T  25863205 acatgtataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgt 25863266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 28296334 - 28296379
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||||||||| |||||||||||| || ||||| ||||    
T  28296334 gataataatttgagaaaatgacataattcaatgtactcatatgtgt 28296379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 28588725 - 28588680
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||| | |||| ||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcg 28588680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 30098334 - 30098379
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||||| |||| |||| |||||    
T  30098334 taataatttgagaaaatcacataattcaatgtaattatagatgtcg 30098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 39696049 - 39695996
Alignment:
Q  41 aataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||| | |||||| | | ||||||||||||||||||| ||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 39695996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 21577161 - 21577117
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtg 82  Q
    |||||||||||||||||||||||||||| | | |||| |||||||    
T  21577161 gataataatttgagaaaataacataattaagtgtaataataggtg 21577117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 43208327 - 43208287
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaatcata 43208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 52369776 - 52369852
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccg 109  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||| || |||||||    
T  52369776 acatggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccg 52369852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 12704717 - 12704654
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||    
T  12704717 caacacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgt 12704654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 3730217 - 3730165
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctg 91  Q
    |||||||||||||| ||| |||||||||| | |||||||||||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtctg 3730165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 13807164 - 13807222
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||  ||||| ||||||||||||| ||||||||||||||||| ||| ||||||    
T  13807164 acgccaacactgataacaatttgagaaaatcacataattcaatataataatatgtgtcg 13807222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 25652095 - 25652025
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttgg 97  Q
    ||||||||| |||||||||||||||||||| | |||||||| | || | |||||||| ||||| |||||||    
T  25652095 acgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttgg 25652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 7931656 - 7931595
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||| |||| |||||||||| |||||| ||||||| | |||| |||||||||||||||||||    
T  7931656 acatagatagtaatttgagagaataacgtaattcagtgtaattataggtgtcgtgtctgtgt 7931595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 12987752 - 12987784
Alignment:
Q  46 tttgagaaaataacataattcaatataatcata 78  Q
    |||||||||||||||||||||||||||||||||    
T  12987752 tttgagaaaataacataattcaatataatcata 12987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 21211287 - 21211351
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgtt 95  Q
    ||||| |||||||||||||||||||| ||||| |||| | |||| || ||||||||||| |||||    
T  21211287 caacacggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgtt 21211351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 20691325 - 20691372
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||||| |||||||||| | |||||||| ||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 25365464 - 25365519
Alignment:
Q  34 catggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||||||| || |||||||||  | |||||||| ||||||||||    
T  25365464 catggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtc 25365519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 25892467 - 25892522
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||| ||||||| | |||||||| | ||||||||||||||||||| ||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgt 25892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 40150624 - 40150577
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgtgtcg 40150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcgt 86  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 15864828 - 15864890
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||| ||| |||||||||||||| ||||| | |||||| | | |||||||||||||||||||    
T  15864828 acgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtc 15864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 24205105 - 24205043
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||| ||| |||||||||||||||||||| ||||||| || | |||| ||| ||||||||||    
T  24205105 acgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtc 24205043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 33006826 - 33006876
Alignment:
Q  35 atggataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||| ||||| |||||||||| | ||||| |||||||||    
T  33006826 atggataataatttgataaaattacataattcagtttaatcgtaggtgtcg 33006876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 34189433 - 34189483
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||||||||||||||||| ||||| |||| | ||||| ||||||||||||    
T  34189433 gataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 37077364 - 37077410
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    |||||||||||||||| |||||||||||||||  ||||||| |||||    
T  37077364 gataataatttgagaatataacataattcaatggaatcatatgtgtc 37077410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 21149073 - 21149121
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgt 86  Q
    ||||||||||||||||||| |||||||||| | |||||| || ||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaatcaaagatgtcgt 21149121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 25074795 - 25074851
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||||||||||| |||||||| | | |||||||||| || ||||| ||||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgt 25074851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 51512232 - 51512180
Alignment:
Q  42 ataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||| ||||| ||||||||||||  ||||||| |||||||||| ||||    
T  51512232 ataatttgataaaatcacataattcaatggaatcatatgtgtcgtgtcggtgt 51512180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6299499 - 6299567
Alignment:
Q  19 acaccaatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtg 87  Q
    ||||||| ||||| |||||||||||||||||||||||| | |||||||||| |||| ||||||||||||    
T  6299499 acaccaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6306309 - 6306377
Alignment:
Q  19 acaccaatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtg 87  Q
    ||||||| ||||| |||||||||||||||||||||||| | |||||||||| |||| ||||||||||||    
T  6306309 acaccaacacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 34446570 - 34446627
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||    
T  34446570 ggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgt 34446627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 6389738 - 6389806
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgtt 95  Q
    ||||| ||| |||||||||||||||||||| | |||||| | | ||||||||||||||||||| |||||    
T  6389738 acgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtt 6389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 12086399 - 12086347
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||| ||| |||||||||| | |||||||||||||||||||    
T  12086399 ggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtc 12086347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 12235573 - 12235521
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||| |||||||| |||||||||| | |||||||||||||||||||    
T  12235573 ggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 13689246 - 13689195
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||||||||||||||| | |||||| ||||||||||| |||||||    
T  13689246 gataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtc 13689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 15443702 - 15443737
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||||||||||||||||||||||    
T  15443702 ataataatttgagaaaataacataattcaatataat 15443737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 13211339 - 13211295
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcat 77  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||    
T  13211339 acattgataataatttgagaaaatgacataatttaatataatcat 13211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 33141265 - 33141297
Alignment:
Q  39 ataataatttgagaaaataacataattcaatat 71  Q
    |||||||||||||||||||||||||||||||||    
T  33141265 ataataatttgagaaaataacataattcaatat 33141297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 17168527 - 17168460
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||  ||||||||||||||||||| | |||||| | | |||| |||||||||||||| ||||    
T  17168527 acgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgt 17168460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 9024225 - 9024183
Alignment:
Q  42 ataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||| |||||||||||| |||||||| |||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtc 9024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 29049892 - 29049930
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcat 77  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  29049892 ataataatttgagaaaattacataattcaatgtaatcat 29049930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 29711261 - 29711303
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataa 73  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  29711261 caacatcgataataatttgagaaaatgacataattcattataa 29711303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 30781345 - 30781291
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||||||||| |||||||| | | |||||||||||||| |||| ||||    
T  30781345 taataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgt 30781291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 7569221 - 7569176
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||||||||| |||||||||| | |||| ||||||||    
T  7569221 gataataatttgagaaaattacataattcagtgtaattataggtgt 7569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 8931649 - 8931608
Alignment:
Q  44 aatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcg 8931608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 9617442 - 9617487
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||||| |||| ||| ||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9617487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 26247431 - 26247488
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||| ||||||| ||||| || | ||||||||||||| ||||||| ||||    
T  26247431 ggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgt 26247488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 30866195 - 30866150
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||||| |||| ||| ||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 30866150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 34229455 - 34229548
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccggaacacctctaatccga 126  Q
    |||||||||||||||||| ||||| ||| || ||| | |||| |||| || |||||  |||| ||| || |||||||| |||| ||||||||||    
T  34229455 acatggataataatttgaaaaaatgacacaagtcagtgtaataatagatgccgtgttggtgtcggtgtcggacaccgggacacatctaatccga 34229548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 2140539 - 2140503
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaat 69  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2140539 acattgataataatttgagaaaatgacataattcaat 2140503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 9629392 - 9629436
Alignment:
Q  41 aataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||| |||||||||||| |||| ||| ||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9629436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 19602234 - 19602178
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||||||||||| | |||||||| | ||||||||||| | ||||| ||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgt 19602178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 19230367 - 19230312
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  19230367 acatagataataatttgagaaaataacataattcaatgtaattataggtgtcgtgt 19230312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 31243600 - 31243530
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccg 109  Q
    |||||||||||||||||| |||||||||| | |||||||||||||| |||| |||||||| || |||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccg 31243530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 20743342 - 20743275
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| ||| |||||||||||||||||||| |||||||||| | ||||||||||||| ||||| ||||    
T  20743342 acgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgt 20743275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 24343502 - 24343569
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| ||| |||||||||||||||||||| |||||||||| | |||| |||||||||||||| ||||    
T  24343502 acgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgt 24343569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 12084215 - 12084277
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||  ||||||||||||||||||||  | ||||||||||||| ||||||||||||||    
T  12084215 acgccaacaccgataataatttgagaaaatagtaaaattcaatataattataggtgtcgtgtc 12084277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 14465347 - 14465300
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  14465347 gataataatttgagaaaatgacataattcaatttaatcatatgtgtcg 14465300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 18513294 - 18513248
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 5654644 - 5654599
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 43300025 - 43299984
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  43300025 ggataataatttgagaaaattacataattcaatgtaatcata 43299984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 43300621 - 43300662
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  43300621 ggataataatttgagaaaattacataattcaatgtaatcata 43300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 5176982 - 5177026
Alignment:
Q  30 ccaacatggataataatttgagaaaataacataattcaatataat 74  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||    
T  5176982 ccaacattgataatattttgagaaaataacataattcaatgtaat 5177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 10546154 - 10546194
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaatcata 10546194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 8820407 - 8820470
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||| ||||||||||||| ||||| ||||||||||||  | ||||| |||||||||| ||||    
T  8820407 caacatcgataataatttgataaaatcacataattcaatggagtcatatgtgtcgtgtcggtgt 8820470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 23915136 - 23915171
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataat 74  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23915136 ataatcatttgagaaaataacataattcaatataat 23915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 25390938 - 25390892
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||| ||||||| |||||||||||||||| |||| ||||||    
T  25390938 ataataattttagaaaatgacataattcaatataaccatatgtgtcg 25390892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 46180986 - 46180944
Alignment:
Q  41 aataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  46180986 aataatttgagaaaataacataattcagtgtaatcatatgtgt 46180944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 3144706 - 3144649
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||| ||||||| | |||||| | | ||||||||||||||||||| ||||    
T  3144706 ggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 3144649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 6285106 - 6285061
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||||| || |||||||||||| || |||||||||    
T  6285106 ataataatttgagaaaacaatataattcaatatgattataggtgtc 6285061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 33950144 - 33950189
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||| ||| |||||||| ||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcg 33950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 34589759 - 34589705
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| ||||||||||||| |||||||||||| |||||||  |||||||||| ||||    
T  34589759 gataacaatttgagaaaatgacataattcaatgtaatcat--gtgtcgtgtcagtgt 34589705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 44797012 - 44796979
Alignment:
Q  41 aataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||||||||||||||| ||||    
T  44797012 aataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 2976695 - 2976739
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcat 77  Q
    |||||| ||||||||||||||||| |||||||| ||| |||||||    
T  2976695 acatgggtaataatttgagaaaatgacataattgaatgtaatcat 2976739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 11110212 - 11110256
Alignment:
Q  41 aataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||| ||||||||| || |||||||| ||||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgtgtcg 11110256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 16402265 - 16402213
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||||||||||||||||| || || | |||| |||| |||||||||    
T  16402265 ggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtc 16402213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 6936460 - 6936397
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| |||||||||| ||||||||| |||||||| | | ||||||||||||||||||||||||    
T  6936460 caacacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgt 6936397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 11634178 - 11634127
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  11634178 ggataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgt 11634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 40747827 - 40747780
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||    
T  40747827 ggataataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 48785317 - 48785283
Alignment:
Q  38 gataataatttgagaaaataacataattcaatata 72  Q
    |||||||||||||||||||||||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaatata 48785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 42005001 - 42004944
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||||| |||||||| | | ||||||||||||| ||||| ||||    
T  42005001 ggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgt 42004944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 39101234 - 39101178
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgtt 95  Q
    ||||||||||||||||||||||||||| | | |||| ||||||||||| || |||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcggtgtt 39101178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 2445880 - 2445923
Alignment:
Q  42 ataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||    
T  2445880 ataatttgagaaaatgacataattcaatttaatcatatgtgtcg 2445923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 11412821 - 11412774
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||| ||||||||| |||||||||||| | |||||||||||||    
T  11412821 gataataatatgagaaaatgacataattcaatgtgatcataggtgtcg 11412774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 11571585 - 11571628
Alignment:
Q  32 aacatggataataatttgagaaaataacataattcaatataatc 75  Q
    |||| |||||||||||||||||||| |||||||||||| |||||    
T  11571585 aacaaggataataatttgagaaaatgacataattcaatgtaatc 11571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 24176420 - 24176373
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||||||||||| ||||| | |||| ||||||||||    
T  24176420 gataataatttgagaaaataacatcattcagtgtaattataggtgtcg 24176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 609509 - 609471
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  609509 taataatttgagaaaattacataattcaacataatcata 609471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 1262892 - 1262926
Alignment:
Q  40 taataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||| |||||||||||||||||    
T  1262892 taataatttgagaaaatcacataattcaatataat 1262926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 3921674 - 3921712
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcat 77  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaatcat 3921712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 22794138 - 22794080
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||| |||||||||||||| ||||| ||||||| || | |||| ||||||||||||||    
T  22794138 caacacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 43609871 - 43609833
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatca 76  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatca 43609833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 17080933 - 17080896
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatca 76  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  17080933 ataataatttgagaaaataacataattgaatgtaatca 17080896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 24806944 - 24806981
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaa 68  Q
    |||||||||||| | |||||||||||||||||||||||    
T  24806944 caacatggataaaattttgagaaaataacataattcaa 24806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 36878469 - 36878514
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||| | |||| ||||||||||    
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgtcg 36878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 43942331 - 43942368
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatca 76  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  43942331 ataatgatttgagaaaataacataattcaatgtaatca 43942368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 6427345 - 6427401
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    |||||||||  | ||||||||||||||||| |||||||||||| |||| ||| ||||    
T  6427345 acgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 30847771 - 30847727
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||| ||||| |||||||||||| |||||||| |||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtc 30847727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 3508058 - 3508103
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgtgt 3508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8798882 - 8798838
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  8798882 taataatttgagaaaataacataattcaatataattatatgtgtc 8798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 37225795 - 37225756
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  37225795 ataataatttgagaaaataacataattcaatgtaatcata 37225756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 40063958 - 40064013
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||| |||||||||| | |||||||||| |||||||| ||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgt 40064013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 30068082 - 30068037
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtg 82  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||    
T  30068082 ggataataatttgagaaaatgacataattcagtataatcgtaggtg 30068037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 13009547 - 13009475
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccg 109  Q
    ||||||||||||||||||| || |||||| | | |||||||| |||||||||| |||| ||| || |||||||    
T  13009547 ggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccg 13009475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 13845241 - 13845309
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacac 107  Q
    |||||||||||||||||| | |||||| |   |||||||||||||||||||||||| ||| || |||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacac 13845309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 33697199 - 33697147
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||| ||||||||||||||||||||| |||||| ||||||| |||| ||||||    
T  33697199 acattgataataatttgagaaaataaaataattgaatataaccatacgtgtcg 33697147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 35431194 - 35431142
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||||||| ||||| || | | |||||||||||||||||||    
T  35431194 ggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtc 35431142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 3658152 - 3658203
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||||||||||||||||||||  || |||| | ||||||||||||||||||    
T  3658152 ggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgt 3658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 9936815 - 9936870
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    |||| ||||||||||| ||||||| | ||||||||||||||||||| |||| ||||    
T  9936815 acatcgataataatttaagaaaatgatataattcaatataatcatatgtgttgtgt 9936870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 12985399 - 12985438
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcata 12985438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 28883930 - 28883879
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtct 90  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||| |||||    
T  28883930 ataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtct 28883879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 44067511 - 44067578
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| ||| |||||||||||||||||||| ||||||| || | |||| ||| |||||||||| ||||    
T  44067511 acgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgt 44067578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 14227229 - 14227259
Alignment:
Q  39 ataataatttgagaaaataacataattcaat 69  Q
    |||||||||||||||||||||||||||||||    
T  14227229 ataataatttgagaaaataacataattcaat 14227259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 29198530 - 29198492
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcata 29198492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 39820436 - 39820486
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||||| | |||||| | | |||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtc 39820486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 22770968 - 22771013
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||| |||| ||||||||||||| |||||||| ||||    
T  22770968 gataataatttgataaaacaacataattcaatgtaatcatatgtgt 22771013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 31236628 - 31236583
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| |||||||||||| |||| ||| ||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 31236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 1676717 - 1676769
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||||| |||||| ||||| || | | |||||||||||||||||||    
T  1676717 ggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtc 1676769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3025559 - 3025603
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||||| |||||||||| | |||| |||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 26466601 - 26466561
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||||||||||||| ||||||||||  |||||||    
T  26466601 gataataatttgagaaaataagataattcaatgcaatcata 26466561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 5938477 - 5938534
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||| ||||| ||||    
T  5938477 ggataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgt 5938534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 17780142 - 17780081
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||| ||||||| ||||||||| || |||| |||||||||||||| ||||    
T  17780142 acatggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgt 17780081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 2525897 - 2525850
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  2525897 gataataatttgagcaaatgacataattcaatataatcatatgtgtcg 2525850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 38134459 - 38134412
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  38134459 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcg 38134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 23930224 - 23930281
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| |||||||||||||| |||||||||| | ||||||||||||| ||||| ||||    
T  23930224 ggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgt 23930281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 29812716 - 29812661
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||| | |||||| | | ||||||||||||||||||| ||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 29812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 43249988 - 43250055
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| ||| |||||||||||||||||||| ||||||| || | |||| ||| |||||||||| ||||    
T  43249988 acgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgt 43250055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 3801257 - 3801207
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||| |||||||||||||||||||  |||||||| |||| |||||    
T  3801257 ataataatttaagaaaataacataattcaaggtaatcataagtgtggtgtc 3801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19206037 - 19206103
Alignment:
Q  19 acaccaatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||| ||||| |||  | ||||||||||||||||| |||||||||| |||||| ||| ||||||    
T  19206037 acaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcg 19206103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 35238237 - 35238199
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatca 76  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  35238237 gataatattttgagaaaatgacataattcaatataatca 35238199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 44172943 - 44172905
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatca 76  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatca 44172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 4909158 - 4909203
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    |||||||||||||||||| |||||||||| | |||||||| |||||    
T  4909158 ataataatttgagaaaattacataattcattgtaatcatatgtgtc 4909203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 24146824 - 24146869
Alignment:
Q  40 taataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  24146824 taataattttagaaaatcacataattcaatataattatatgtgtcg 24146869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 38804619 - 38804558
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||| ||| |||||||||||| ||||||| ||||||| ||   ||||||||||||||||||    
T  38804619 acgccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgt 38804558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 7133327 - 7133287
Alignment:
Q  42 ataatttgagaaaataacataattcaatataatcataggtg 82  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtg 7133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 23751905 - 23751957
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||| ||||| | |||||| | | |||||||||||||||||||    
T  23751905 ggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtc 23751957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 36314679 - 36314635
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    |||||||||||||||||| ||||| |||||| |||||||| ||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgt 36314635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 41229348 - 41229304
Alignment:
Q  41 aataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||| |||||||||  |||||||||||| ||||    
T  41229348 aataatttgagaaaatgacataattctgtataatcataggcgtcg 41229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10535826 - 10535762
Alignment:
Q  24 aatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    |||||||| |||  ||||||||||||||||||| |||||||||| | |||||||| |||||||||    
T  10535826 aatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 12748685 - 12748741
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||||||||||| ||||| |||| | ||||||||||||| |||||    
T  12748685 acatggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtc 12748741  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 24011031 - 24011098
Alignment:
Q  27 acgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||| |||| ||||||||||||||||||| |||||||| | | ||||||||||||||| ||| ||||    
T  24011031 acgccgacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgt 24011098  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 25544488 - 25544543
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||| | |||||||| | ||||||||||||||||||| ||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgt 25544543  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 2073941 - 2073979
Alignment:
Q  31 caacatggataataatttgagaaaataacataattcaat 69  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  2073941 caacatcgataataatttgagaaaataacataattcaat 2073979  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 18570978 - 18571024
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 30563414 - 30563471
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    |||||||||||||||||||| |||||||||||| |||  |||||||| ||||| ||||    
T  30563414 ggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgt 30563471  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 4690296 - 4690336
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  4690296 gataataatttgagaaaataacataatttaatacaatcata 4690336  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 11308053 - 11308001
Alignment:
Q  42 ataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||| ||||| |||||||||| | ||||||||||||||||||| ||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgt 11308001  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 19573984 - 19574040
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||| |||||||||||||||||| | |||| ||||||| |||||| ||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgt 19574040  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 19613665 - 19613621
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||||    
T  19613665 ataataatttgagaaaataacataattcaatgtaatgatatgtgt 19613621  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 23354705 - 23354649
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 94  Q
    ||||||||||||||||||| | |||||| | | ||||||||||||||||||| ||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 23354649  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 10250727 - 10250770
Alignment:
Q  33 acatggataataatttgagaaaataacataattcaatataatca 76  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||    
T  10250727 acattgataataatttgagaaaataacacaattcaatgtaatca 10250770  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 34007044 - 34006997
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    ||||||||||||||||| | |||||||||| | |||||||||||||||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 44605191 - 44605156
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaat 44605156  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 23406874 - 23406920
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||    
T  23406874 gataataatttaagaaaattacataattcagaataatcataggtgtc 23406920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 30394441 - 30394509
Alignment:
Q  16 catacaccaatacgccaacatggataataatttgagaaaataacataattcaatataatcataggtgtc 84  Q
    |||||||||| || | ||||  || ||| ||| |||||||| |||||||||| ||||||||||||||||    
T  30394441 catacaccaacactctaacacagacaatcattggagaaaatgacataattcagtataatcataggtgtc 30394509  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 31026701 - 31026741
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcata 78  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaatcata 31026741  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 36611906 - 36611942
Alignment:
Q  39 ataataatttgagaaaataacataa-ttcaatataat 74  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36611906 ataataatttgagaaaataacataatttcaatataat 36611942  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 40681988 - 40682024
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataat 74  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  40681988 gataataatttgagaaaatgacataattcaatgtaat 40682024  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 240073 - 240027
Alignment:
Q  39 ataataatttgagaaaataacataattcaatataatcataggtgtcg 85  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatcatatgtgtcg 240027  T

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Target: scaffold0598 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 8107 - 8055
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    |||||||||||||||||||| |||||||||| | ||| ||||||| |||||||    
T  8107 ggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtc 8055  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 225321 - 225271
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgtcgtgt 88  Q
    ||||||||||||||||||| ||||||| |||| |||| ||| |||||||||    
T  225321 gataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgt 225271  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 99899 - 99944
Alignment:
Q  38 gataataatttgagaaaataacataattcaatataatcataggtgt 83  Q
    ||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  99899 gataataattttagaaaataacataattcaatgtaattatatgtgt 99944  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 1954 - 2006
Alignment:
Q  37 ggataataatttgagaaaataacataattcaatataatcataggtgtcgtgtc 89  Q
    ||||||||||||| |||||| ||||| || | | |||||||||||||||||||    
T  1954 ggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtc 2006  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 102903 - 102947
Alignment:
Q  30 ccaacatggataataatttgagaaaataacataattcaatataat 74  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||    
T  102903 ccaacatcgataataatttgagaaaatgatataattcaatgtaat 102947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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