View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9001_low_91 (Length: 233)
Name: NF9001_low_91
Description: NF9001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9001_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 32301905 - 32302108
Alignment:
| Q |
12 |
attatactagtagataaaataatgattttttaaaatttgtattaatttcccaaaatcacctataatcgttcatattattattaaactactttttctcggt |
111 |
Q |
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| T |
32301905 |
attatattagtagataaaataatgattttttaaaatttgtattaatttcccaaaatcacctataatcgttcatattattattagactactttttctcggt |
32302004 |
T |
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| Q |
112 |
tgtttggtaaatctggactttaatttcggatctttctgcatcttcttttacttgggtttctcatatcttgtgtttgttgtttccttaacgatgccagctg |
211 |
Q |
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| T |
32302005 |
tgtttggtaaatctggacttttatttcggatctttctgcatcttcttttacttgggtttctcatatcttgtgtttgttgtttccttaacgatgctagctg |
32302104 |
T |
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| Q |
212 |
gaag |
215 |
Q |
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|||| |
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| T |
32302105 |
gaag |
32302108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 32807849 - 32807793
Alignment:
| Q |
13 |
ttatactagtagataaaataatgattttttaaaatttgtattaatttcccaaaatca |
69 |
Q |
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||||| ||||| |||||||||| |||||||||| ||||||||||| ||||||||| |
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| T |
32807849 |
ttatattagtaaataaaataatacatttttaaaatgtgtattaattttccaaaatca |
32807793 |
T |
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