View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9002_high_1 (Length: 458)
Name: NF9002_high_1
Description: NF9002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9002_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 43296302 - 43296748
Alignment:
| Q |
1 |
atctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcctccccatattgccgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43296302 |
atctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcctccccatattgccgtgg |
43296401 |
T |
|
| Q |
101 |
actctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaaaatgggaggaaatctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43296402 |
actctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaaaatgggaggaaatctga |
43296501 |
T |
|
| Q |
201 |
tgtatgcttcctcatgtaagcagctgccatttctcgaagttgttggaatgtatatggagattttcccccaaagaggtgggccaactgattctcaacagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43296502 |
tgtatgcttcctcatgtaagcagctgccatttctcgaagttgttggaatgtatatggagattttcccccaaagaggtgggccaaatgattctcaacagct |
43296601 |
T |
|
| Q |
301 |
ctgtaaaggcagtgcccatcaggctttatttcacatacagtcaaaccaagaggcttcaacttcctttcaagtttctcattttcaactgtgcgatcactta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43296602 |
ctgtaaaggcagtgcccatcaggctttatttcacatacagtcaaaccaagaggcttcaacttcctttcgagtttctcattttcaactgtgcgatcactta |
43296701 |
T |
|
| Q |
401 |
taatgtcattctgctctgcttggattctctgttctctctctgcttct |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43296702 |
taatgtcattctgctctgcttggattctctgttctctctctgcttct |
43296748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 44024708 - 44024262
Alignment:
| Q |
1 |
atctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcctccccatattgccgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44024708 |
atctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcctccccatattgccgtgg |
44024609 |
T |
|
| Q |
101 |
actctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaaaatgggaggaaatctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44024608 |
actctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgataaacaaaatgggaggaaatctga |
44024509 |
T |
|
| Q |
201 |
tgtatgcttcctcatgtaagcagctgccatttctcgaagttgttggaatgtatatggagattttcccccaaagaggtgggccaactgattctcaacagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44024508 |
tgtatgcttcctcatgtaagcagctgccatttctcgaagttgttggaatgtatatggagattttcccccaaagaggtgggccaactgattctcaacagct |
44024409 |
T |
|
| Q |
301 |
ctgtaaaggcagtgcccatcaggctttatttcacatacagtcaaaccaagaggcttcaacttcctttcaagtttctcattttcaactgtgcgatcactta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44024408 |
ctgtaaaggcagtgcccatcaggctttatttcacatacagtcaaaccaagaggcttcaacttcctttcgagtttctcattttcaactgtgcgatcactta |
44024309 |
T |
|
| Q |
401 |
taatgtcattctgctctgcttggattctctgttctctctctgcttct |
447 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44024308 |
tattgtcattctgctctgcttggattctctgttctctctctgcttct |
44024262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University