View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9002_low_1 (Length: 812)

Name: NF9002_low_1
Description: NF9002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9002_low_1
NF9002_low_1
[»] scaffold0268 (1 HSPs)
scaffold0268 (10-149)||(18950-19090)
[»] chr8 (18 HSPs)
chr8 (10-149)||(9866132-9866272)
chr8 (183-251)||(13513469-13513537)
chr8 (183-251)||(13603002-13603070)
chr8 (183-251)||(13514864-13514932)
chr8 (183-251)||(13604397-13604465)
chr8 (172-251)||(44103295-44103374)
chr8 (80-149)||(130107-130177)
chr8 (183-251)||(21670113-21670181)
chr8 (183-251)||(39323836-39323904)
chr8 (183-251)||(21961872-21961940)
chr8 (183-246)||(39325838-39325901)
chr8 (189-251)||(44102004-44102066)
chr8 (189-251)||(13363577-13363639)
chr8 (189-243)||(15116864-15116918)
chr8 (183-244)||(13360402-13360463)
chr8 (275-390)||(16362560-16362677)
chr8 (275-380)||(36939902-36940008)
chr8 (104-133)||(9875166-9875195)
[»] scaffold0031 (1 HSPs)
scaffold0031 (10-136)||(91205-91331)
[»] chr6 (4 HSPs)
chr6 (12-136)||(24016705-24016829)
chr6 (10-149)||(2196936-2197076)
chr6 (10-124)||(629834-629949)
chr6 (179-251)||(19368517-19368589)
[»] chr5 (9 HSPs)
chr5 (10-136)||(22292705-22292831)
chr5 (184-230)||(12829620-12829666)
chr5 (184-230)||(12861599-12861645)
chr5 (176-251)||(15510262-15510337)
chr5 (184-241)||(2166161-2166218)
chr5 (183-251)||(15509244-15509312)
chr5 (184-251)||(41906397-41906464)
chr5 (184-214)||(14210193-14210223)
chr5 (75-136)||(13579005-13579066)
[»] scaffold1603 (1 HSPs)
scaffold1603 (10-122)||(192-304)
[»] chr7 (12 HSPs)
chr7 (10-124)||(13926055-13926169)
chr7 (175-251)||(24495050-24495126)
chr7 (174-251)||(44113469-44113546)
chr7 (179-251)||(26407402-26407474)
chr7 (175-217)||(24494026-24494068)
chr7 (183-251)||(30223975-30224043)
chr7 (183-251)||(36673835-36673903)
chr7 (183-251)||(41126288-41126356)
chr7 (197-251)||(30222709-30222763)
chr7 (197-251)||(44114655-44114709)
chr7 (179-244)||(38408280-38408345)
chr7 (10-74)||(38656967-38657032)
[»] chr4 (11 HSPs)
chr4 (183-251)||(36604840-36604908)
chr4 (174-251)||(2292190-2292267)
chr4 (174-251)||(2293524-2293601)
chr4 (192-251)||(44160410-44160469)
chr4 (409-458)||(33296597-33296646)
chr4 (176-217)||(38371838-38371879)
chr4 (183-251)||(526718-526786)
chr4 (183-251)||(36604489-36604557)
chr4 (183-250)||(18358373-18358440)
chr4 (196-251)||(29686318-29686373)
chr4 (276-337)||(38417695-38417756)
[»] chr2 (14 HSPs)
chr2 (175-251)||(26205054-26205130)
chr2 (184-247)||(4512156-4512219)
chr2 (275-378)||(4830546-4830650)
chr2 (183-231)||(37982740-37982788)
chr2 (176-251)||(2305582-2305657)
chr2 (184-251)||(14714542-14714609)
chr2 (184-251)||(41296453-41296520)
chr2 (409-458)||(4830404-4830453)
chr2 (409-458)||(24476541-24476590)
chr2 (10-74)||(29075916-29075981)
chr2 (196-251)||(2306660-2306715)
chr2 (184-251)||(8537062-8537129)
chr2 (179-237)||(3665269-3665327)
chr2 (17-74)||(15573347-15573405)
[»] chr3 (13 HSPs)
chr3 (183-251)||(7483524-7483592)
chr3 (183-251)||(17350101-17350169)
chr3 (179-251)||(39287515-39287587)
chr3 (189-248)||(31638173-31638232)
chr3 (183-251)||(32973188-32973256)
chr3 (275-373)||(26797460-26797558)
chr3 (295-378)||(19252873-19252957)
chr3 (183-251)||(26797368-26797436)
chr3 (183-251)||(32974222-32974290)
chr3 (183-251)||(48035323-48035391)
chr3 (183-251)||(53047946-53048014)
chr3 (183-251)||(53049036-53049104)
chr3 (186-245)||(7483161-7483220)
[»] chr1 (19 HSPs)
chr1 (174-251)||(51218965-51219042)
chr1 (172-251)||(51217656-51217735)
chr1 (183-251)||(35683104-35683172)
chr1 (196-251)||(25889491-25889546)
chr1 (184-251)||(30551588-30551655)
chr1 (276-370)||(34654219-34654314)
chr1 (184-251)||(37624569-37624636)
chr1 (189-251)||(27689338-27689400)
chr1 (10-74)||(27052624-27052689)
chr1 (183-251)||(48935109-48935177)
chr1 (196-251)||(2237977-2238032)
chr1 (184-251)||(9415674-9415741)
chr1 (184-251)||(22766819-22766886)
chr1 (184-251)||(23082125-23082192)
chr1 (184-251)||(34654339-34654406)
chr1 (196-251)||(35684202-35684257)
chr1 (275-337)||(14765008-14765070)
chr1 (179-249)||(34531708-34531778)
chr1 (341-386)||(44978530-44978575)
[»] scaffold0015 (1 HSPs)
scaffold0015 (183-251)||(207797-207865)
[»] scaffold0177 (1 HSPs)
scaffold0177 (196-251)||(1817-1872)
[»] scaffold0002 (1 HSPs)
scaffold0002 (204-251)||(458459-458506)


Alignment Details
Target: scaffold0268 (Bit Score: 113; Significance: 9e-57; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 18950 - 19090
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18950 agcagaaacaataaatgaatattttacaatataatatgaaacattaaaatattctagcaggtaatttacctccagctgtccttccatgggaaaattgtgc 19049  T
Q  110 atggtgcacaaatctatcatttgtgca-gctaaataccacc 149  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  19050 atggtgcacaaatctatcatttgtgcatgctaaatgccacc 19090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 9866272 - 9866132
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||| ||||||||||    
T  9866272 agcagaaacaataaatgaatattttacaatataatatgaaacattaaaatattctagcaggtcatttacctacagctgtccttccatggaaaaattgtgc 9866173  T
Q  110 atggtgcacaaatctatcatttgtgca-gctaaataccacc 149  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  9866172 atggtgcacaaatctatcatttgtgcatgctaaatgccacc 9866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 13513469 - 13513537
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  13513469 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13513537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 13603002 - 13603070
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  13603002 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13603070  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 13514932 - 13514864
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  13514932 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgtta 13514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 13604465 - 13604397
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  13604465 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgtta 13604397  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 44103374 - 44103295
Alignment:
Q  172 agaatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||| |||||||||||||    
T  44103374 agaatgatcccctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgtta 44103295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 130107 - 130177
Alignment:
Q  80 gccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgca-gctaaataccacc 149  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  130107 gccagctatccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 21670113 - 21670181
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  21670113 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggtcttctccgtta 21670181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 39323836 - 39323904
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||||||||||| || ||||||| |||||| |||||||||||| |||||||||||||    
T  39323836 ctaactaaaaaacgtctcaaattgatctcttatgtcttcttccgttacctcttttggtcctctccgtta 39323904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 21961872 - 21961940
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| |||||||||||||    
T  21961872 ctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgtta 21961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 39325901 - 39325838
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctc 246  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||| ||||    
T  39325901 ctaactaaaaaacgttttaaattggtcccttatgttttcttccgttacctcttttagtcatctc 39325838  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 44102004 - 44102066
Alignment:
Q  189 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||| ||||    
T  44102004 aaaaaacgtctcaaattggtctcttatgtcttcttccgttacctcttttggtcctctctgtta 44102066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 13363639 - 13363577
Alignment:
Q  189 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||| |||| |||||||||||||||||||   |||||||||||| |||||||||||||    
T  13363639 aaaaaacgtttcaatttggtcccttatgttttctgtggttacctcttttggtcctctccgtta 13363577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 15116918 - 15116864
Alignment:
Q  189 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcct 243  Q
    ||||||||||||||||| ||| |||| ||||||||| |||||||||||| |||||    
T  15116918 aaaaaacgtctcaaattagtctcttacgttttcttccgttacctcttttggtcct 15116864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 13360402 - 13360463
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctc 244  Q
    |||| |||||||||||||||||||||||||||||| |||| | |||| || |||| ||||||    
T  13360402 ctaattaaaaaacgtctcaaattggtcccttatgtattctaccgttatctattttggtcctc 13360463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 390
Target Start/End: Original strand, 16362560 - 16362677
Alignment:
Q  275 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa--attttttccttgtcttcttctcattccctcttctt 372  Q
    ||||||||||||| | ||  ||||||||| |||| |||| ||||  || ||| ||||||||||  ||||||||||| ||||||||||  |  ||||||||    
T  16362560 gatatgatttcaaccgttcgattgcaggtacattgtatataacagtgagccaacaacacctaattattttttccttttcttcttctctctgtctcttctt 16362659  T
Q  373 cctcttgagcttcaccat 390  Q
    |||| | | |||||||||    
T  16362660 cctcgtaatcttcaccat 16362677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 36940008 - 36939902
Alignment:
Q  275 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttc-cttgtcttcttctcattccctcttcttc 373  Q
    |||||| |||||| ||||  |||||||||||||| |||| || |  |||||| ||||| || | ||||||  ||| |||||| ||||||||||||| |||    
T  36940008 gatatggtttcaaccattcgattgcaggtccattgtatataatagtgaaccaccaacatctgatttttttttcttttcttctcctcattccctcttattc 36939909  T
Q  374 ctcttga 380  Q
    |||||||    
T  36939908 ctcttga 36939902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 9875166 - 9875195
Alignment:
Q  104 ttgtgcatggtgcacaaatctatcatttgt 133  Q
    ||||||||||||||||||||||||||||||    
T  9875166 ttgtgcatggtgcacaaatctatcatttgt 9875195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 91205 - 91331
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| |||||||||||||||||   |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||    
T  91205 agcagaaacaataaatgaatattttacaatataatatgtttcattaaaataatccagcaggtaaattaccgacagctgtccttccatgggaaaattgtgc 91304  T
Q  110 atggtgcacaaatctatcatttgtgca 136  Q
    |||||||||||||||||||||||||||    
T  91305 atggtgcacaaatctatcatttgtgca 91331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 24016829 - 24016705
Alignment:
Q  12 cagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcat 111  Q
    |||| ||||||||||||| |||||||||||||||||   |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  24016829 cagaaacaataaatgaatattttacaatataatatgtttcattaaaataatccagcaggtaaattaccgtcagctgtccttccatgggaaaattgtgcat 24016730  T
Q  112 ggtgcacaaatctatcatttgtgca 136  Q
    |||||||||||||||||||||||||    
T  24016729 ggtgcacaaatctatcatttgtgca 24016705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 2196936 - 2197076
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| |||||||||||||||||   ||||||||||||| || |||||||||||||||||||||||||||||   ||||||||||    
T  2196936 agcagaaacaataaatgaatattttacaatataatatgtttcattaaaatattccagtaggtaaattaccgccagctgtccttccatacaaaaattgtgc 2197035  T
Q  110 atggtgcacaaatctatcatttgtgca-gctaaataccacc 149  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  2197036 atggtgcacaaatctatcatttgtgcatgctaaatgccacc 2197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 629949 - 629834
Alignment:
Q  10 agcagagacaataaatg-aatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtg 108  Q
    |||||| |||||||||| ||| || |||||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  629949 agcagaaacaataaatggaatattatacaatataatatttttgattaaaatattccagcaggtaaattaccgccagctgtccttccatggaaaaattgtg 629850  T
Q  109 catggtgcacaaatct 124  Q
    ||||||||||||||||    
T  629849 catggtgcacaaatct 629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 19368589 - 19368517
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||| |||  ||||||| |||||| ||||||| ||||   |||||||||||| |||||||||||||    
T  19368589 tcctctaactataaagtgtctcaatttggtctcttatgtcttctgtcgttacctcttttagtcctctccgtta 19368517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 22292705 - 22292831
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||    
T  22292705 agcagaaacaataaatgaatattttacaatataatatgtttcattaaaatattccagcaggtatgaaaccgccagctgtccttccatgggaaaattgtgc 22292804  T
Q  110 atggtgcacaaatctatcatttgtgca 136  Q
    |||||||||||||||||||||||||||    
T  22292805 atggtgcacaaatctatcatttgtgca 22292831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 12829620 - 12829666
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttac 230  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12829620 taactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12829666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 12861599 - 12861645
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttac 230  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12861599 taactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12861645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 15510337 - 15510262
Alignment:
Q  176 tgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||| ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||| ||||    
T  15510337 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgtta 15510262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 2166161 - 2166218
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtc 241  Q
    |||||||||||||||||||| ||||||||||||| |||| | |||| || ||||||||    
T  2166161 taactaaaaaacgtctcaaactggtcccttatgtattctgccgttatctattttcgtc 2166218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 15509244 - 15509312
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | ||||||| |||| |||||||||||||    
T  15509244 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgtta 15509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 41906464 - 41906397
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||||||||||| ||||||| | |||| | ||||||| |||| |||| || |||||    
T  41906464 taactaaaaaacgtctcaaattggccccttatatattctgccgttacctattttggtccacttcgtta 41906397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 14210193 - 14210223
Alignment:
Q  184 taactaaaaaacgtctcaaattggtccctta 214  Q
    |||||||||||||||||||||||||||||||    
T  14210193 taactaaaaaacgtctcaaattggtccctta 14210223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 13579005 - 13579066
Alignment:
Q  75 ttaccgccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgca 136  Q
    ||||||||| |||||||||||||   || ||||||||| |||||||||||  ||||||||||    
T  13579005 ttaccgccaactgtccttccatgcacaagttgtgcatgatgcacaaatcttgcatttgtgca 13579066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 192 - 304
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| |||||||||||||||||   ||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||||    
T  192 agcagaaacaataaatgaatattttacaatataatatgtttcattaaaatattccagaaggtaaattaccaccagctgtcattccatgggaaaattgtgc 291  T
Q  110 atggtgcacaaat 122  Q
    |||||||||||||    
T  292 atggtgcacaaat 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 13926055 - 13926169
Alignment:
Q  10 agcagagacaataaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgc 109  Q
    |||||| ||||||||||||| ||||| |||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||   ||| ||||||    
T  13926055 agcagaaacaataaatgaatattttataatataatatgttttattaaaatattccagcaggtaaattaccgccagctgtccttccatacaaaagttgtgc 13926154  T
Q  110 atggtgcacaaatct 124  Q
    |||||||||||||||    
T  13926155 atggtgcacaaatct 13926169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 24495126 - 24495050
Alignment:
Q  175 atgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  24495126 atgatcccttaactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgtta 24495050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 44113469 - 44113546
Alignment:
Q  174 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||| | ||||||| |||| |||| || |||||    
T  44113469 aatgatcccttaactaaaaaacgtctcaaattggtcccttatgtattctgccgttacctattttggtccacttcgtta 44113546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 26407474 - 26407402
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||||||||||||||||| |||||||| | |   ||||||| |||| |||||||| ||||    
T  26407474 tcctctaactaaaaaacgtctcaaattggtctcttatgttatttgtcgttacctattttagtcctctctgtta 26407402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 24494026 - 24494068
Alignment:
Q  175 atgatcctctaactaaaaaacgtctcaaattggtcccttatgt 217  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  24494026 atgatcccctaactaaaaaatgtctcaaattggtcccttatgt 24494068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 30224043 - 30223975
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | ||||| |||||| |||||||||||||    
T  30224043 ctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgtta 30223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 36673903 - 36673835
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||| ||||||| |||||||||||||| ||||   |||||||||||| |||||||| ||||    
T  36673903 ctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctcagtta 36673835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 41126288 - 41126356
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  41126288 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 41126356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 30222709 - 30222763
Alignment:
Q  197 tctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  30222709 tctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 30222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 44114709 - 44114655
Alignment:
Q  197 tctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| ||||||||||| | |||| |||| ||||||||| |||||||||||||    
T  44114709 tctcaaactggtcccttatatcttctactgtcacctcttttggtcctctccgtta 44114655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 38408345 - 38408280
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctc 244  Q
    ||||||||||| |||  |||||||||||||||||||||| |||| | |||| || |||| ||||||    
T  38408345 tcctctaactataaagtgtctcaaattggtcccttatgtcttctgccgttatctattttggtcctc 38408280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 38657032 - 38656967
Alignment:
Q  10 agcagagacaataaatgaa-tgttttacaatataatatgaaacattaaaatattctagcaggtaaa 74  Q
    |||||| ||||||||| || | |||||||||||||||||   ||||||||||||| ||||||||||    
T  38657032 agcagaaacaataaataaaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 38656967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 36604908 - 36604840
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  36604908 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcctctccgtta 36604840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 2292190 - 2292267
Alignment:
Q  174 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||| || |||||||| ||||    
T  2292190 aatggtcccctaactaaaaaacgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctctgtta 2292267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 2293601 - 2293524
Alignment:
Q  174 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| || | |||| || |||||||||||||    
T  2293601 aatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgtta 2293524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 44160469 - 44160410
Alignment:
Q  192 aaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||||||||||||| |||||||||||| | || | |||||||| ||||    
T  44160469 aaacgtctcaaattggtcccttatgtattcttctgttacttattgtggtcctctctgtta 44160410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 33296597 - 33296646
Alignment:
Q  409 attcatttcttcctccattacaatctgcaccaacaacacaattgatacaa 458  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  33296597 attcatttcttcctccattacaacctttaccaacaacacaattaatacaa 33296646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 38371879 - 38371838
Alignment:
Q  176 tgatcctctaactaaaaaacgtctcaaattggtcccttatgt 217  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  38371879 tgatcccctaactaaaaaacgtctcaaattgatcccttatgt 38371838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 526786 - 526718
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| ||||||||||||||  |||  ||||||||||||| |||||||||||||    
T  526786 ctaactataaagtgtctcaacttggtcccttatgtcatctgatgttacctcttttggtcctctccgtta 526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 36604489 - 36604557
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||| ||||||||||||||||| || |   ||||||||||||  || |||||||||    
T  36604489 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgtta 36604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 18358440 - 18358373
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtt 250  Q
    ||||||||||||||||| ||||||||||||||||| || |   ||||||||||||  || ||||||||    
T  18358440 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgtt 18358373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 29686318 - 29686373
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||||||||| || |   |||||||||||| |||||||||||||    
T  29686318 gtctcaaattggtcccttatgtcttatgtcgttacctcttttggtcctctccgtta 29686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 38417695 - 38417756
Alignment:
Q  276 atatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa 337  Q
    |||||||||||| | ||  |||||||||||||| |||||||||| || ||| ||||||||||    
T  38417695 atatgatttcaaccgtttgattgcaggtccattgtatacaacactgacccatcaacacctaa 38417756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 26205054 - 26205130
Alignment:
Q  175 atgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  26205054 atgatcccttaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgtta 26205130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 4512156 - 4512219
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctcc 247  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||    
T  4512156 taactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctcc 4512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 4830650 - 4830546
Alignment:
Q  275 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttc-cttgtcttcttctcattccctcttcttc 373  Q
    ||||||||||||| ||||  |||| ||||||||| |||||||||  |||||| |||||||||| ||||||| ||| ||||| ||||  |||||| |||||    
T  4830650 gatatgatttcaaccattcgattgtaggtccattgtatacaacattgaaccaacaacacctaatttttttctcttttcttcctctccctccctcgtcttc 4830551  T
Q  374 ctctt 378  Q
    |||||    
T  4830550 ctctt 4830546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 37982740 - 37982788
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  37982740 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacc 37982788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 2305582 - 2305657
Alignment:
Q  176 tgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||| ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  2305582 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 2305657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 14714542 - 14714609
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||| |||||||| ||||||||||  ||||||| |||||| |||||| ||||| |||||||||||||    
T  14714542 taacttaaaaacgtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgtta 14714609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 41296520 - 41296453
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||| |||| ||||||||||||||||| |   |||| ||||||| |||||||||||||    
T  41296520 taactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgtta 41296453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 4830453 - 4830404
Alignment:
Q  409 attcatttcttcctccattacaatctgcaccaacaacacaattgatacaa 458  Q
    |||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  4830453 attcatttcttcctccattacaacatgtaccaacaacacaattaatacaa 4830404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 24476590 - 24476541
Alignment:
Q  409 attcatttcttcctccattacaatctgcaccaacaacacaattgatacaa 458  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  24476590 attcatttcttcctccattacaacctttaccaacaacacaattaatacaa 24476541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 29075916 - 29075981
Alignment:
Q  10 agcagagacaataaatg-aatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 74  Q
    |||||| |||||||||| ||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  29075916 agcagaaacaataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 29075981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 2306715 - 2306660
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| ||||||| |||||| |||| | |||||||||||| |||||||||||||    
T  2306715 gtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgtta 2306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 8537062 - 8537129
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||| |||||||||||||||||||||| ||||   |||| || |||| ||| |||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgtta 8537129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 3665269 - 3665327
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctctttt 237  Q
    ||||||||||| |||| || |||| |||||||||||||| |||| | ||||||||||||    
T  3665269 tcctctaactataaaatgtttcaatttggtcccttatgtcttctgccgttacctctttt 3665327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 15573347 - 15573405
Alignment:
Q  17 acaataaatg-aatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 74  Q
    |||||||||| ||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  15573347 acaataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 15573405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 7483592 - 7483524
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  7483592 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgtta 7483524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 17350169 - 17350101
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||    
T  17350169 ctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgtta 17350101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 39287515 - 39287587
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||   |||||||||||| |||||||||||||    
T  39287515 tcctctaactataaagtgtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctctccgtta 39287587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 31638173 - 31638232
Alignment:
Q  189 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccg 248  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||  |||||||||    
T  31638173 aaaaaacgtctcaaattggttccttatgtcttcttatgttacctcttttgatcctctccg 31638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 32973188 - 32973256
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  32973188 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgtta 32973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 26797460 - 26797558
Alignment:
Q  275 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttccttgtcttcttctcattccctcttcttc 373  Q
    ||||| ||||||| ||||  |||||||||||||| |||||||||  | |||| |||||||||| ||||||     |||||||||| |||||||||||||    
T  26797460 gatataatttcaaccatttgattgcaggtccattgtatacaacaatggaccatcaacacctaatttttttttccttcttcttctccttccctcttcttc 26797558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 19252957 - 19252873
Alignment:
Q  295 attgcaggtccattttatacaacaccgaaccagcaacacctaaatttttt-ccttgtcttcttctcattccctcttcttcctctt 378  Q
    |||||| ||||||| |||||  ||  |||||| |||||||||| |||||| || | |||||||||| ||||||||||||||||||    
T  19252957 attgcaagtccattatataccgcattgaaccaccaacacctaattttttttccctttcttcttctccttccctcttcttcctctt 19252873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 26797368 - 26797436
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||||||||||||| |||||||| || | | ||||||| | || | |||||||||||    
T  26797368 ctaactaaaaaacgtctcaaattggttccttatgtattatgccgttacctatcttggccctctccgtta 26797436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 32974290 - 32974222
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| ||| |||||||||    
T  32974290 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 32974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 48035391 - 48035323
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| || | | |||||||||||| |||||||||||||    
T  48035391 ctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgtta 48035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 53047946 - 53048014
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  53047946 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 53049104 - 53049036
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  53049104 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53049036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 7483161 - 7483220
Alignment:
Q  186 actaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctct 245  Q
    |||||||||||||||||||||||| ||||||| || |   |||||||||||| |||||||    
T  7483161 actaaaaaacgtctcaaattggtctcttatgtcttttgtcgttacctcttttggtcctct 7483220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 51219042 - 51218965
Alignment:
Q  174 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||  || |||||||||||||    
T  51219042 aatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgtta 51218965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 51217656 - 51217735
Alignment:
Q  172 agaatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||| ||| |||| ||||||| | |||||||||||||||||||| |||||| ||||||||| || |||||||||||||    
T  51217656 agaatggtcccctaattaaaaaatgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctccgtta 51217735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 35683104 - 35683172
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  35683104 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 35683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 25889546 - 25889491
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||||| ||||||| |||||| |||||||||||| |||||||||||||    
T  25889546 gtctcaatttggtcacttatgtcttcttccgttacctcttttggtcctctccgtta 25889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 30551655 - 30551588
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||| | |||| |||||||||||||||||||   |||||||||||| ||| |||||||||    
T  30551655 taactaaaaaacatttcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgtta 30551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 34654314 - 34654219
Alignment:
Q  276 atatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacaccta-aattttttccttgtcttcttctcattccctcttc 370  Q
    |||||||||||| ||||  |||||||||||||| |||||||||  |||||| |||||| ||   |||||||||| ||||||||||  |||||||||    
T  34654314 atatgatttcaaccattcgattgcaggtccattgtatacaacaatgaaccaacaacacatagttttttttccttatcttcttctccctccctcttc 34654219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 37624636 - 37624569
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||| |||| ||||||| |||||||||||   ||||| |||||| |||||||||||||    
T  37624636 taactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgtta 37624569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 27689338 - 27689400
Alignment:
Q  189 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||||| |||| |||||| ||||||||||||   |||||||||||| |||||||||||||    
T  27689338 aaaaaacgtttcaatttggtctcttatgttttctgtcgttacctcttttggtcctctccgtta 27689400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 27052624 - 27052689
Alignment:
Q  10 agcagagacaataaatg-aatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 74  Q
    |||||| |||||||||| ||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  27052624 agcagaaacaataaatggaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 27052689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 48935177 - 48935109
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| ||| |||||||||    
T  48935177 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 48935109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 2238032 - 2237977
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  2238032 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 2237977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 9415674 - 9415741
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||||| ||||||||||||||||| || | | ||||||| |||| |||| || |||||    
T  9415674 taactaaaaaacgtcttaaattggtcccttatgtattatgccgttacctattttggtccacttcgtta 9415741  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 22766886 - 22766819
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||| |||| ||| |||||||||||||||   ||| |||||||| ||||| |||||||    
T  22766886 taactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgtta 22766819  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 23082192 - 23082125
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||| |||| |||||||||||| ||||||   ||| |||||||| ||||| |||||||    
T  23082192 taactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgtta 23082125  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 34654406 - 34654339
Alignment:
Q  184 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||| ||||||| |||| |||||| ||||||| |||| | ||||||||| || |||||||||||||    
T  34654406 taactataaaacgtttcaatttggtctcttatgtcttctaccgttacctctattggtcctctccgtta 34654339  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 35684257 - 35684202
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  35684257 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 35684202  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 14765070 - 14765008
Alignment:
Q  275 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa 337  Q
    ||||||||||||| | ||  |||||||||||||| |||||||||| || ||| ||||||||||    
T  14765070 gatatgatttcaaccttttgattgcaggtccattgtatacaacactgacccatcaacacctaa 14765008  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 34531708 - 34531778
Alignment:
Q  179 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgt 249  Q
    ||||||||||| |||| ||||||| |||||| ||||||| ||||   |||| ||||||| |||||||||||    
T  34531708 tcctctaactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctcttttggtcctctccgt 34531778  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 44978575 - 44978530
Alignment:
Q  341 ttttccttgtcttcttctcattccctcttcttcctcttgagcttca 386  Q
    |||||||| |||||||||| |||||| ||||||||||||| |||||    
T  44978575 ttttccttttcttcttctccttccctattcttcctcttgatcttca 44978530  T

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Target: scaffold0015 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 207865 - 207797
Alignment:
Q  183 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| |||||||||||||    
T  207865 ctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgtta 207797  T

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Target: scaffold0177 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 1817 - 1872
Alignment:
Q  196 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  1817 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 1872  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 458506 - 458459
Alignment:
Q  204 ttggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 251  Q
    |||||||||||||| |||| |||||| ||||||| |||||||||||||    
T  458506 ttggtcccttatgtcttctgctgttatctcttttggtcctctccgtta 458459  T

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