View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9002_low_4 (Length: 397)
Name: NF9002_low_4
Description: NF9002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9002_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 40564226 - 40564379
Alignment:
| Q |
86 |
aagcttctgtgtagtcacgcgtttgaagccttaaagctagattttagaatgacatttagaatgatttttagaaatacaaagaaaaaccnnnnnnnnctaa |
185 |
Q |
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| T |
40564226 |
aagcttctgcgtagtcacgcgtttgaaaccttaaagttagattttagaatgacatttagaatgatttttagaaatacaaagaaaaacc-tttttttctaa |
40564324 |
T |
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| Q |
186 |
aaataactattcaaatactagctttaagttaaaatggtttttagaatgattatag |
240 |
Q |
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| T |
40564325 |
aaataactattcaaatactagctttaagttaaaatggtttttagaatgattatag |
40564379 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 40564612 - 40564675
Alignment:
| Q |
318 |
gttataataaactgggctaacttgagcttaagattaaagaagccgaaagaaatgagaagaaaga |
381 |
Q |
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| T |
40564612 |
gttataacaaactgggctaacttgagcttaagattaaagaagccgaaagaaatgagaagaaaga |
40564675 |
T |
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