View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9002_low_5 (Length: 335)

Name: NF9002_low_5
Description: NF9002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9002_low_5
NF9002_low_5
[»] chr4 (13 HSPs)
chr4 (1-335)||(31159795-31160140)
chr4 (4-309)||(31488840-31489156)
chr4 (1-309)||(31030274-31030593)
chr4 (4-309)||(31020396-31020712)
chr4 (45-309)||(31529098-31529373)
chr4 (7-309)||(31150903-31151215)
chr4 (122-272)||(31476292-31476442)
chr4 (197-309)||(31023507-31023619)
chr4 (7-93)||(31162178-31162264)
chr4 (201-308)||(31501366-31501473)
chr4 (230-288)||(31162413-31162471)
chr4 (141-243)||(31496261-31496363)
chr4 (120-165)||(31482235-31482280)
[»] chr6 (18 HSPs)
chr6 (119-311)||(12785590-12785782)
chr6 (115-309)||(12782147-12782341)
chr6 (119-311)||(12781400-12781592)
chr6 (141-243)||(33288248-33288350)
chr6 (145-304)||(33307163-33307322)
chr6 (141-304)||(33361171-33361334)
chr6 (146-304)||(33265560-33265718)
chr6 (146-304)||(33274704-33274862)
chr6 (7-93)||(33288103-33288189)
chr6 (26-103)||(12786226-12786303)
chr6 (222-311)||(12791994-12792083)
chr6 (7-93)||(33060083-33060169)
chr6 (141-179)||(33060228-33060266)
chr6 (7-93)||(33265410-33265496)
chr6 (7-93)||(33274554-33274640)
chr6 (145-179)||(33641986-33642020)
chr6 (7-105)||(33642071-33642169)
chr6 (12-93)||(9169391-9169472)
[»] scaffold0570 (1 HSPs)
scaffold0570 (143-187)||(9737-9781)
[»] chr8 (1 HSPs)
chr8 (132-186)||(6473158-6473212)
[»] chr3 (7 HSPs)
chr3 (142-179)||(23353881-23353918)
chr3 (142-179)||(23406730-23406767)
chr3 (142-179)||(23441861-23441898)
chr3 (142-179)||(23449251-23449288)
chr3 (142-179)||(23465384-23465421)
chr3 (142-179)||(23474393-23474430)
chr3 (142-179)||(36025448-36025485)
[»] scaffold0201 (1 HSPs)
scaffold0201 (143-179)||(13559-13595)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 31159795 - 31160140
Alignment:
Q  1 gattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactaggga 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31159795 gattcatgttggaatctttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaataggga 31159894  T
Q  101 gaacacgagttccag-----------cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaa 189  Q
    |||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159895 gaacacgagttccagaaacttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaa 31159994  T
Q  190 aacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159995 aacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttga 31160094  T
Q  290 agggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31160095 agggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggc 31160140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 4 - 309
Target Start/End: Complemental strand, 31489156 - 31488840
Alignment:
Q  4 tcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaa 103  Q
    |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |||  ||| ||||    
T  31489156 tcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaa 31489057  T
Q  104 cacgagttcca-----------gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaac 192  Q
    ||||  |||||           | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||   |||| |||||    
T  31489056 cacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaac 31488957  T
Q  193 ctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagg 292  Q
    ||  ||  ||||||||||| ||| ||||||||||||||| ||||||||||| |  || ||||  ||||| || || ||||  ||||||||||||||||||    
T  31488956 ctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagg 31488857  T
Q  293 gcagcaaaaagatgatc 309  Q
    |||||||||||||||||    
T  31488856 gcagcaaaaagatgatc 31488840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 31030274 - 31030593
Alignment:
Q  1 gattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactaggga 100  Q
    ||||||||||||||| ||| ||| ||||||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |||  ||| |    
T  31030274 gattcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaa 31030373  T
Q  101 gaacacgagttccag-----------cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaa 189  Q
    |||||||  ||||||           |||| |||||||| | |||| |||||||||||||| |||||||||||||||||||| |||| ||   |||| ||    
T  31030374 gaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaa 31030473  T
Q  190 aacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttga 289  Q
    |||||  ||  ||||||||||| ||| ||||||||||| ||||||||||||||| |  || ||||  || || || |||||||  |||||||||||||||    
T  31030474 aacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttga 31030573  T
Q  290 agggcagcaaaaagatgatc 309  Q
    ||||||||||||||||||||    
T  31030574 agggcagcaaaaagatgatc 31030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 31020396 - 31020712
Alignment:
Q  4 tcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaa 103  Q
    |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |||  ||| ||||    
T  31020396 tcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaa 31020495  T
Q  104 cacgagttccag-----------cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaac 192  Q
    ||||  ||||||           |||| |||||||| | |||| |||||||||||||| |||||||||| ||||||||| |||| ||   |||| |||||    
T  31020496 cacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgaggaagaatagtttttggagaggaccgcaatgaaaac 31020595  T
Q  193 ctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagg 292  Q
    ||  ||  ||||||||||| ||| ||||||||||| ||||||||||||||| |  || ||||  || || || |||||||  ||||||||||||||||||    
T  31020596 ctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagg 31020695  T
Q  293 gcagcaaaaagatgatc 309  Q
    |||||||||||||||||    
T  31020696 gcagcaaaaagatgatc 31020712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 31529098 - 31529373
Alignment:
Q  45 ataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttccag-----------cagtgaaggatgtattcc 133  Q
    |||||| ||| |||| | || |||||| |||||||||||||||||||||  ||||||||||||  ||||||           || ||||||||||||| |    
T  31529098 ataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgc 31529197  T
Q  134 aactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatgg 233  Q
    || || ||||||||||| ||||||||||||||||| ||||||||||  ||||| |||  |   |||||||| || ||| ||||||| || |||||||| |    
T  31529198 aattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatag 31529297  T
Q  234 attcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatc 309  Q
    ||||||||||||| || ||||  ||||| || |||||||| |||||| || |||| ||||| | ||||||||||||    
T  31529298 attcacctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttatttggagggcggaaaaaagatgatc 31529373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 31150903 - 31151215
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacac 106  Q
    ||||||||| ||||||| ||||| || | ||||||  |||||| ||| ||||||| || |||||| || |||||||||||||||||   ||| |||||||    
T  31150903 tgttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacac 31151002  T
Q  107 gagttccag-----------cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctt 195  Q
    |  ||||||           |  ||||| ||| | ||||| |||||||| |||||   ||||||||||||||| || ||||| |  |||| ||||| ||     
T  31151003 gttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctg 31151102  T
Q  196 tgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggca 295  Q
     ||| ||||||||||  ||||||| || |||||||||||||||||||||||||| |||| |||||||||||||| ||  |||  ||||||||| ||||||    
T  31151103 agagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatg-attttctttgcagggca 31151201  T
Q  296 gcaaaaagatgatc 309  Q
    ||||||||||||||    
T  31151202 gcaaaaagatgatc 31151215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 31476442 - 31476292
Alignment:
Q  122 aggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagct 221  Q
    |||||||||||||| |||  ||||||||| |||||| |||| ||||| ||||| ||||  ||||  |||||||  ||  ||||||||||||||| ||| |    
T  31476442 aggatgtattccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagtt 31476343  T
Q  222 cgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaa 272  Q
    | |||||||||||||||||||| |  || ||||  |||||||| |||||||    
T  31476342 caggtgctatggattcacctttttgaagattagtgtcatccctaaatgcaa 31476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 31023507 - 31023619
Alignment:
Q  197 gaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcag 296  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||||||||| ||  | | ||| ||| ||||||||| ||| ||||||||| | | || ||    
T  31023507 gaggcttcaattgcatgagggagctatggtgcaatggattcacctttcttgagcattgcatcgtccttgaatgcaatgataccttttcttcggaaggaag 31023606  T
Q  297 caaaaagatgatc 309  Q
    |||||||||||||    
T  31023607 caaaaagatgatc 31023619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 31162178 - 31162264
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    ||||||||| ||| ||| ||||||  || ||||||  ||||| |||| ||||||| ||||| |||| ||||||||||||||||||||    
T  31162178 tgttggaatctttgttcatgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaa 31162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 31501473 - 31501366
Alignment:
Q  201 cttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttct-ttgaagggcagcaa 299  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||    || ||||  |||||||| |||||||  ||||||| ||| ||||| |||| |||    
T  31501473 cttcaattgcacgaagaagctcggatgctatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgccttctctgttgaa-ggcatcaa 31501375  T
Q  300 aaagatgat 308  Q
    |||||||||    
T  31501374 aaagatgat 31501366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 31162413 - 31162471
Alignment:
Q  230 atggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttg 288  Q
    |||||||||||||| || || |||||||||||||| |||||||  || |||||||||||    
T  31162413 atggattcacctttgttgagcttagaatcatccctaaatgcaaaaataccttttctttg 31162471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 31496363 - 31496261
Alignment:
Q  141 gcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacc 240  Q
    |||||||| | |||||| ||||||||||  |||| ||||  |||| ||||||||  |||  ||||||||||  ||||||||  ||| |||||||||||||    
T  31496363 gcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcacc 31496264  T
Q  241 ttt 243  Q
    |||    
T  31496263 ttt 31496261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 31482280 - 31482235
Alignment:
Q  120 gaaggatgtattccaactctcgcaagcaccatgttgaggaagcata 165  Q
    ||||||||||| |||| || ||||||||||| ||||||||||||||    
T  31482280 gaaggatgtataccaattcacgcaagcaccaagttgaggaagcata 31482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 12785590 - 12785782
Alignment:
Q  119 tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaagga 218  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || ||||| |  |||||  ||| ||  ||||||||||||||   || ||    
T  12785590 tgaaggatgtattccaattctcgcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaaga 12785689  T
Q  219 gctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcgg 311  Q
    |  ||||||||||| |||||||||| || || ||||  ||||| |||||||||   ||||||  |||||| ||||||||||||||||||||||    
T  12785690 gtccgggtgctatgaattcaccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcgg 12785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 12782147 - 12782341
Alignment:
Q  115 gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatga 214  Q
    ||||| |||||||||| | || |||||||| ||||| ||||| |||||||||||||| ||||| |  ||||| |||||||  ||| |||||||||| |||    
T  12782147 gcagttaaggatgtatgctaattctcgcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttga 12782246  T
Q  215 aggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatc 309  Q
    | ||| |||| ||||||||| | |||||| |  || ||||  ||||| ||||||| ||  || | |||||||||||||||| |||||||||||||    
T  12782247 atgaggtcggatgctatggaattacctttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatc 12782341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 12781400 - 12781592
Alignment:
Q  119 tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaagga 218  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| |  |||||  ||||||  ||||||||||||||   || ||    
T  12781400 tgaaggatgtattccaattctcgcaaacaccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaaga 12781499  T
Q  219 gctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcgg 311  Q
    |  ||||||||||| |||| ||||| || || ||||  ||||| |||||||||   ||||||  |||||| ||||||||| ||| ||||||||    
T  12781500 gtccgggtgctatgaattcgccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcgg 12781592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 33288248 - 33288350
Alignment:
Q  141 gcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacc 240  Q
    ||||||||||||||||||||||||||||| ||||||| | | |||  |||||||  ||  |||| |||||  |||||||||| ||| |||||||||||||    
T  33288248 gcaagcaccatgttgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcacc 33288347  T
Q  241 ttt 243  Q
    |||    
T  33288348 ttt 33288350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 33307163 - 33307322
Alignment:
Q  145 gcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttc 244  Q
    ||||||||||||||||||||||||  ||||||||| | ||| |||||||   ||  |||| |||||  |||||||||| ||| |||| |||||||| ||     
T  33307163 gcaccatgttgaggaagcatagttccttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttt 33307262  T
Q  245 ttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaaga 304  Q
    |  || ||||  |||||||  |||||||  ||||||||| ||| ||||||| ||||||||    
T  33307263 tgaagattagtgtcatcccgaaatgcaaaaatgccttttgtttcaagggcatcaaaaaga 33307322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 33361171 - 33361334
Alignment:
Q  141 gcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacc 240  Q
    |||| |||||||||||||||||||||||| |||| |||| | ||| ||||||||  ||  |||| |||||  ||| |||||||||| | |||||||||||    
T  33361171 gcaaacaccatgttgaggaagcatagtttcttgaaaagaatgcaacaaaaacctgagatccttcgattgctcgaatgagctcgggtccgatggattcacc 33361270  T
Q  241 tttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaaga 304  Q
    |||    || ||||  ||||||   ||| |||  ||||||||| ||||||||||| ||||||||    
T  33361271 ttttggaagattagtgtcatccaaaaatacaataatgccttttgtttgaagggcatcaaaaaga 33361334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 33265560 - 33265718
Alignment:
Q  146 caccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttct 245  Q
    |||||||||||||||||||||||| |||| ||||   ||| |||||| |  ||  |||| |||||  |||||||||||||| | ||||||||||||||      
T  33265560 caccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttg 33265659  T
Q  246 tcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaaga 304  Q
      || ||||  ||||||   ||| |||  ||||||||| ||||||||||| ||||||||    
T  33265660 gaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaaga 33265718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 33274704 - 33274862
Alignment:
Q  146 caccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttct 245  Q
    |||||||||||||||||||||||| |||| ||||   ||| |||||| |  ||  |||| |||||  |||||||||||||| | ||||||||||||||      
T  33274704 caccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttg 33274803  T
Q  246 tcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaaga 304  Q
      || ||||  ||||||   ||| |||  ||||||||| ||||||||||| ||||||||    
T  33274804 gaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaaga 33274862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33288103 - 33288189
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    ||||||||| ||| ||| ||| ||| || |||||| |||||| | ||| |||| | || ||||||||||||||||||||||||||||    
T  33288103 tgttggaatgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaa 33288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 12786226 - 12786303
Alignment:
Q  26 gtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaa 103  Q
    |||||||||||| ||| |||||||  ||| |||| | || |||||||||||||||||||||||| ||| |||| ||||    
T  12786226 gtttggcaagggattcgccataaccaccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 12791994 - 12792083
Alignment:
Q  222 cgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcgg 311  Q
    ||||||||||| |||||||||| || || || | |||||| |||||| ||   ||| || ||||||| ||||||||||||||||||||||    
T  12791994 cgggtgctatgaattcaccttttttaagttttgtatcatctctgaattcatttatgtctcttctttgtagggcagcaaaaagatgatcgg 12792083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33060083 - 33060169
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    ||||||||| ||| ||| |||||| |||  ||||| | |||| ||||| |||| |  | ||||||||||||||||||||||||||||    
T  33060083 tgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaa 33060169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 33060228 - 33060266
Alignment:
Q  141 gcaagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  33060228 gcaagcaccacgttgaggaagcatagttctttgagaaga 33060266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33265410 - 33265496
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33265410 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33265496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33274554 - 33274640
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33274554 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33274640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 33642020 - 33641986
Alignment:
Q  145 gcaccatgttgaggaagcatagttttttgagaaga 179  Q
    ||||||||||||||||||||||||| |||||||||    
T  33642020 gcaccatgttgaggaagcatagtttcttgagaaga 33641986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 33642169 - 33642071
Alignment:
Q  7 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaaca 105  Q
    ||||||||| ||| ||| |||||| |||  ||||| | |||| ||||| |||| | ||  ||||||||||||||||||||||| ||| |||| ||||||    
T  33642169 tgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaaca 33642071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 9169391 - 9169472
Alignment:
Q  12 gaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 93  Q
    |||| ||| ||| ||||||||||  ||||| | |||| | ||| |||| | || ||||||||||||||||||||||||||||    
T  9169391 gaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaa 9169472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 9781 - 9737
Alignment:
Q  143 aagcaccatgttgaggaagcatagttttttgagaagagtacaata 187  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||    
T  9781 aagcaccattttgaggaagcatagttttctgagaagattacaata 9737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 6473158 - 6473212
Alignment:
Q  132 ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat 186  Q
    |||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||    
T  6473158 ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat 6473212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23353881 - 23353918
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23353881 caagcaccattttgaggaagcatagttttctgagaaga 23353918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23406730 - 23406767
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23406730 caagcaccattttgaggaagcatagttttctgagaaga 23406767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23441861 - 23441898
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23441861 caagcaccattttgaggaagcatagttttctgagaaga 23441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23449251 - 23449288
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23449251 caagcaccattttgaggaagcatagttttctgagaaga 23449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23465384 - 23465421
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23465384 caagcaccattttgaggaagcatagttttctgagaaga 23465421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 23474393 - 23474430
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23474393 caagcaccattttgaggaagcatagttttctgagaaga 23474430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 36025448 - 36025485
Alignment:
Q  142 caagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  36025448 caagcaccattttgaggaagcatagtcttttgagaaga 36025485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 13559 - 13595
Alignment:
Q  143 aagcaccatgttgaggaagcatagttttttgagaaga 179  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  13559 aagcaccattttgaggaagcatagttttctgagaaga 13595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University