View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_high_18 (Length: 308)
Name: NF9003_high_18
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_18 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 23440794 - 23440501
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaaactttaaaca |
110 |
Q |
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| T |
23440794 |
gaacctgtgaacgacgacggtaaatacgatgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaaactttaaaca |
23440695 |
T |
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| Q |
111 |
atttagacatttgttggtatatatgttttagtaaaa-ttgatgagttattaaaggtgtaactatatgtgtatgttttagttcttgggaagaaaaatattc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23440694 |
atttagacatttgttggtatatatgttttagtaaaatttgatgagttattaaaggtgtaactatatgtgtatattttagttcttgggaagaaaaatattc |
23440595 |
T |
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| Q |
210 |
tatgttttagcatatgttctata------------tttcctagaactttatattcaaccgttaaatttattaaattaagttctataggcagtta |
291 |
Q |
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| T |
23440594 |
tatgttttagcatatgttctatatgtttgatatatttacctagaactttatattcaacggttaaatttattaaattatgttctataggtagtta |
23440501 |
T |
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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 17665172 - 17665260
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggagaaaa |
100 |
Q |
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| T |
17665172 |
gaacctgtgaacgacaacggtaa-tacgacgaactggaaatacagatggaatgccgaaggaagaagggtgcaacagtgatgcggagaaaa |
17665260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 19888 - 19974
Alignment:
| Q |
11 |
gaacctgtgaacgacgacggtaaatacgacgaactggaaatacagagggaacgccgaagtaagaagggtgcaacgctgatgtggaga |
97 |
Q |
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| T |
19888 |
gaacctgtgaacaacgacgctaaagacgacgaactggaaagactgagggaacgctaaaagaaaaagggtgcaaaggtgatgtggaga |
19974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 10486005 - 10485971
Alignment:
| Q |
106 |
aaacaatttagacatttgttggtatatatgtttta |
140 |
Q |
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| T |
10486005 |
aaacaatttagacatttgttggtatatatgtttta |
10485971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 10460165 - 10460131
Alignment:
| Q |
106 |
aaacaatttagacatttgttggtatatatgtttta |
140 |
Q |
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| T |
10460165 |
aaacaatttaaacatttgttggtatatatgtttta |
10460131 |
T |
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