View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_high_2 (Length: 767)
Name: NF9003_high_2
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 1 - 758
Target Start/End: Complemental strand, 35685496 - 35684739
Alignment:
| Q |
1 |
tgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatattgacaatataaatgaaacgtcttagttccgacttca |
100 |
Q |
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| T |
35685496 |
tgaatattaaaagggtcaacaatttttctctctgtcaatggacaaaaagtttttatcacaatattgacaatataaatgaaacgtcttagttccgacttca |
35685397 |
T |
|
| Q |
101 |
aaattttgtataatgcaaagaggttagggttagaagataggaataatatattgcnnnnnnngcggtgtgcacatactataaatcatcataaaaattgcaa |
200 |
Q |
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| T |
35685396 |
aaattttgtataatgcaaagaggttagggttagaagataggaataatatgttgcaaaaaaagtggtatgcacatactataaatcatcataaaaattgcaa |
35685297 |
T |
|
| Q |
201 |
ctctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatatattaataccattatgtgcacattagacaaaaatcta |
300 |
Q |
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| T |
35685296 |
ctctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatatattaataccattatgtgcacattagacaaaaatcta |
35685197 |
T |
|
| Q |
301 |
gatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgcacacttctggaatgacttcaacaagcaagtcggctcct |
400 |
Q |
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| T |
35685196 |
gatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgcacacttctggaatgacttcaacaagcaagtcggctcct |
35685097 |
T |
|
| Q |
401 |
ttacggtaaaccaatcgactgataacaacaataacaatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcag |
500 |
Q |
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| T |
35685096 |
ttacggtaaaccaatcgactgataacaacaataacaatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcag |
35684997 |
T |
|
| Q |
501 |
tgtcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgact |
600 |
Q |
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| T |
35684996 |
tgtcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgact |
35684897 |
T |
|
| Q |
601 |
cacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatccc |
700 |
Q |
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| T |
35684896 |
cacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatccc |
35684797 |
T |
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| Q |
701 |
atgattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccat |
758 |
Q |
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| T |
35684796 |
atgattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccat |
35684739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 503 - 758
Target Start/End: Original strand, 40672148 - 40672403
Alignment:
| Q |
503 |
tcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactca |
602 |
Q |
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||||| |||||||||||||||||||| || || || | |||||| |||| || || ||||| ||||| ||||| |||||||||||||| || ||| ||| |
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| T |
40672148 |
tcaacggcattaggtattacaaaaactttatctggtggcaaacctgaccgtaacactgtgttttccttgcttgtgtgagaaacacatatggcttgagtca |
40672247 |
T |
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| Q |
603 |
catctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccat |
702 |
Q |
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| T |
40672248 |
catctgccaaggtaaactgcaacaccttgttcatgtgaatgcttccagcatcagcaaaaccgtacagagaatgatctgtaaacacaaccttgtatcccat |
40672347 |
T |
|
| Q |
703 |
gattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccat |
758 |
Q |
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| |||| |||||||| || | |||||||||| ||| ||||||| ||| ||||||| |
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| T |
40672348 |
ggttcttgcatgcatgagagtttcatgacaaaatgtcgaaaaggcttggtgtccat |
40672403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 40672031 - 40672095
Alignment:
| Q |
374 |
atgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaat |
438 |
Q |
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| T |
40672031 |
atgacttcgacaagcaaatctactcccttccgataaaccaatcggctgataacaacaataacaat |
40672095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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