View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_high_20 (Length: 289)
Name: NF9003_high_20
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 43612800 - 43613080
Alignment:
| Q |
1 |
accatctttgttaaaactctctgcatctccagcccatttgtatagtcctgatttctggaaatctgccattgatggataggactgcaagtaaattcaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612800 |
accatctttgttaaaactctctgcatctccagcccatttgtatagtcctgatttctggaaatctgccattgatggataggactgcaagtaaattcaccaa |
43612899 |
T |
|
| Q |
101 |
ttcaatgttaaaaccatcaactgatcaaacaagaaaccagtaataaaattatatg-aagtacagacacatgcacgatataacactaacacatgttagaca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
43612900 |
ttcaatgttaaaaccatcaactgatcaaacaagaaatcagtaataaaattatatgtaagtacagacacatacacgatatgacactgacacatgttagaca |
43612999 |
T |
|
| Q |
200 |
ttaaacgcactttcatttgaagtgttgatgctacatcggtaaaattatattttaagttgaaaacacagatcctagaattat |
280 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43613000 |
ttagacgcactttcatttgaagtgttgatgctacatccgtaaaattatattttaagttgaaaacacagatcctagagttat |
43613080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University