View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_high_22 (Length: 282)
Name: NF9003_high_22
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 17442291 - 17442557
Alignment:
| Q |
1 |
ttcttaagcgtcctactttttgtttctttctaaaatataccatttgatcggattatataatctgaaccatgtttttgttatataataagaattgttttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |
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| T |
17442291 |
ttcttaagcgtcctactttttgtttctttctaaaatatactatttgatcggattatataatatgaaccatgtttttgttatataataaaaattgttttag |
17442390 |
T |
|
| Q |
101 |
aattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17442391 |
aattcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaattttttattatataaaataatataaaagacattgagcttatgattata--t |
17442488 |
T |
|
| Q |
201 |
cactaaatcattatatagttgttaatgatatacatttctactaatccactcaaggcctatgctacaatc |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||| |
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| T |
17442489 |
cactaaatcattatatagttgttaatgatatacatttctactaacccgcttaaggcctgtgctacaatc |
17442557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 269
Target Start/End: Complemental strand, 21545660 - 21545496
Alignment:
| Q |
103 |
ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca |
202 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||| || ||||||||| |||||||| |||||| |||||||||||||| |||||||| |||||||| | |
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| T |
21545660 |
ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa |
21545562 |
T |
|
| Q |
203 |
ctaaatcattatatagttgttaatgatatacatttctactaatccac-tcaaggcctatgctacaatc |
269 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||| |||||||| | |||||| |||| |||||||| |
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|
| T |
21545561 |
ata--tcattatgtagttgttaatgatatacatttcaactaatccgcttcaaggtctatactacaatc |
21545496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
| Q |
141 |
attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta |
240 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| ||| |||| ||||||| | ||||||| ||||| |||||||| ||||||||||| | |
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| T |
21943513 |
attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa |
21943414 |
T |
|
| Q |
241 |
ctaat |
245 |
Q |
| |
|
||||| |
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|
| T |
21943413 |
ctaat |
21943409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
| Q |
151 |
ttttcattatataaaataatataaaagacattgagcttatgattatat |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||| ||||||| |
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|
| T |
20117168 |
ttttcaatatataaaataatataaaagagattgaggttataattatat |
20117121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
| Q |
103 |
ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat |
198 |
Q |
| |
|
||||||| |||||||| | | ||||| | |||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| ||||||| |
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|
| T |
5882036 |
ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat |
5882131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
| Q |
141 |
attcaacaatttttcattatataaaataatataaaagacattgagcttat |
190 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8040339 |
attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat |
8040290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
| Q |
210 |
attatatagttgttaatgatatacatttctactaat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24578430 |
attatatagttgttaatgatatacatttcaactaat |
24578465 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
| Q |
140 |
tattcaacaatttttcatta-tataaaataatataaaagacattgag |
185 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
42575279 |
tattcaacaatttttcaataatataaaataatataaaagacaatgag |
42575233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
| Q |
115 |
cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca |
180 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||||| |||||||||||||||||| ||||||||||| |
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|
| T |
7504292 |
cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca |
7504357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 3797375 - 3797331
Alignment:
| Q |
205 |
aaatcattatatagttgttaatgatatacatttctactaatccac |
249 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||| |
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|
| T |
3797375 |
aaatcattatgtagttgttaacaatatacatttcaactaatccac |
3797331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 4216500 - 4216456
Alignment:
| Q |
205 |
aaatcattatatagttgttaatgatatacatttctactaatccac |
249 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||| |
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|
| T |
4216500 |
aaatcattatgtagttgttaacaatatacatttcaactaatccac |
4216456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
| Q |
37 |
ataccatttgatcggattatataatctgaaccatgttt |
74 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
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|
| T |
11154445 |
ataccatttgctcggattatagaatctgaaccatgttt |
11154408 |
T |
|
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