View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_high_3 (Length: 665)
Name: NF9003_high_3
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 653
Target Start/End: Complemental strand, 15964087 - 15963449
Alignment:
| Q |
19 |
catcctactcggccatagccaagtatcaacatattttagatctaatctttcataatccaacccattctcttaatttatttccaggtctct--attctcca |
116 |
Q |
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| T |
15964087 |
catcctactcggccatagccaagtatcaacatattttagatctaatctttcataatccaacccattctcttaatttatttccaggtctctctattctcca |
15963988 |
T |
|
| Q |
117 |
tatcaataacatttcaatcgttgacaccctttcttcattgttcaaaattctcatattcaaaccgatattaatcaatctacctgcttcaatctacatttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15963987 |
tatcaataacatttcaatcgttgacaccctttcttcattgttcaaaattctcatattcaaaccgatattaatcaatctacctgcttcaatctacatttca |
15963888 |
T |
|
| Q |
217 |
agttaaaggttgctaaaaatattgaacaacaacaattacttaaccaatgaatttttacatgttggtttggaggctgtgctgctaaactacatatcacaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |
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| T |
15963887 |
agttaaaggttgctaaaaatattgaacaacaacaattacttaaccaatgaattttgacatgttggtttggaggccgtactgctaaactacatatcacaaa |
15963788 |
T |
|
| Q |
317 |
accattaccatccattccacaatatttcttttgatagaaatgcatcacacatgacagcactttcgtgcaaggttataaataatctttagcatgtacagcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15963787 |
accattaccatccattccacaatatttcttttgatagaaatgcatcacacttgacagcactttcgtgcaaggttataaataacctttagcatgtacagcc |
15963688 |
T |
|
| Q |
417 |
tcattaagctggccaa--agaggcaagtgcaacctacctgtaacnnnnnnnnaactcgatatccagcttaaggaccgactaatcgggaagattaatttca |
514 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
15963687 |
tcattaagctggccaaagagaggcaagtgcaacctacctgtaacttttttttaactcgatatccaacttaaggaccgattaatcgaaaagattaatttca |
15963588 |
T |
|
| Q |
515 |
ctgtccacttgtagaagcctcatttaaagcgagagcaaagctcatgtgcatggactagtcctcaaaaattgtcactagaagtattcaaacttaagacctt |
614 |
Q |
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| T |
15963587 |
ctatccacttgtagaagtttcgtttaaagccagagcaaagttcatgtgcatggactagcccacaaaaattgtcactggaagtattcaaacttaagacctt |
15963488 |
T |
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| Q |
615 |
aagaggaatacaatccaatgtctcaagccaacaccacca |
653 |
Q |
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| T |
15963487 |
aagaggaatacaatctaatgtctcaagcctacaccacca |
15963449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 653
Target Start/End: Complemental strand, 47079773 - 47079719
Alignment:
| Q |
599 |
tcaaacttaagaccttaagaggaatacaatccaatgtctcaagccaacaccacca |
653 |
Q |
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|||||| ||||||||||||||||| ||| ||||| || |||||||||||||||| |
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| T |
47079773 |
tcaaacctaagaccttaagaggaacacattccaagatcccaagccaacaccacca |
47079719 |
T |
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