View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_high_5 (Length: 636)
Name: NF9003_high_5
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 619
Target Start/End: Original strand, 26621294 - 26621901
Alignment:
| Q |
12 |
agcacagacactacacattggacatccacaaacaagtgtaagaaggtaagattcaagttcttctgaaagtttatcgagagcagtaaaaaatttaaaaaca |
111 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621294 |
agcacaaacgctacacattggacatccacaaactagtgtaagaaggtaagattcaagttcttctgaaagtttatcgagagcagtaaaaaatttaaaaaca |
26621393 |
T |
|
| Q |
112 |
aatctagatccttgattgaggcagtaactcacactgaagatcaaggagatatttatagctcgagtctaacaaactctaactaatctatgaaactaacttc |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621394 |
aatctagatccttgattgaggtagtaactcacactgaagatcaaggagatatttatagctcgagtctaacaaactctaactaatctatgaaactaacttc |
26621493 |
T |
|
| Q |
212 |
tgataaccttgctgaatgccgagtgaacacaatagaaaatataaagttatgctactctatgctaatgcccataacaagcctatggttgagccaagatgct |
311 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26621494 |
tgataaccttgctgaatgtcgagtcaacacaatagaaaagataaagttatgctactctatgctaatgctcataacaagcctatggttgagccaagatgct |
26621593 |
T |
|
| Q |
312 |
aactagcacaagtagcttgtattacaaggcatctctatgctgcttctaattccaaattgtttaacaatgaccaactttgtcatcgaaggagaggcctagt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621594 |
aactagcacaagtagcttgtattacaaggcatctctatgctgcttctaattccaaattgtttaacaatgaccaactttgtcatcgaaggagaggcctagt |
26621693 |
T |
|
| Q |
412 |
gacaagagttgagacactaatatattttatgaaggaagtataaggttcaatatcttctactaataaatcgccatctccctaacgaattaatctctaacaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621694 |
gacaagagttgagacactaatatattttatgaaggaagtataaggttcaatatcttctactaataaatcgccatctccctaacgaattaatctctaacaa |
26621793 |
T |
|
| Q |
512 |
tttgcatataggactaaattcaaatttataaaaactataaatatcaacgattcagtagcaagtacagtatattcaattaaagacaaaagacaaagcaatg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621794 |
tttgcatataggactaaattcaaatttataaaaactataaatatcaacaattcggtagcaagtacagtatattcaattaaagacaaaagacaaagcaatg |
26621893 |
T |
|
| Q |
612 |
aatcatct |
619 |
Q |
| |
|
|||||||| |
|
|
| T |
26621894 |
aatcatct |
26621901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University