View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_high_9 (Length: 453)
Name: NF9003_high_9
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 296 - 439
Target Start/End: Complemental strand, 3759383 - 3759240
Alignment:
| Q |
296 |
cttagaaaaacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattagtactaat |
395 |
Q |
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| T |
3759383 |
cttagaaagacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattattactaat |
3759284 |
T |
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| Q |
396 |
caataattaactaattaactaacacgagtagttccatacacagg |
439 |
Q |
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| T |
3759283 |
caataattaactaattaactaacacgggtagttccatacacagg |
3759240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 285
Target Start/End: Complemental strand, 3759665 - 3759486
Alignment:
| Q |
94 |
acgtcccaaaaactcacgaatacggacatgttgaatgtttgaaagggtgtcaattcgagatttggtggaataaaggatttgttgtggtcaaaataaatga |
193 |
Q |
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| T |
3759665 |
acgtcccaaaaactcacgaaaacagatatgtttaatgttagaaagagtgtcaattccagatttggtggaataaattatttgttggggtcaaaataaatga |
3759566 |
T |
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| Q |
194 |
c---gcttgtctctcgtgaacatctcgcgatacaacaattcttgaggttaagcattactctatttttgttctttttgttcacatcacacttacaa |
285 |
Q |
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| T |
3759565 |
cacgtcttatctctcctgaacatctcgcaatacaac---------------gcattactctatttttgttctttttgttcacatcgcacttacaa |
3759486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 3759976 - 3759880
Alignment:
| Q |
2 |
gccaatcggctcagcaagttaattcattggcactatgat-------atctgtgagattgattgtttcaaactacacttgttattatagagccctcctata |
94 |
Q |
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| T |
3759976 |
gccaatcggctcagcaagttaattcattggcactatgataaatgtaatttgtgagattgattgtttcaaactacac---ttattatagagccctactata |
3759880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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